CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, mitochondrion

Predictor Summary:

plastid 3
extracellular 2
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55119	Soybean	extracellular	64.84	53.9
KRH28792	Soybean	nucleus	74.22	34.05
KRH76662	Soybean	nucleus	72.66	33.33
GSMUA_Achr11P...	Banana	mitochondrion	59.38	31.41
Zm00001d011122_P001	Maize	cytosol	59.38	31.02
KXG19241	Sorghum	nucleus	59.38	30.89
GSMUA_Achr5P21340_001	Banana	cytosol, nucleus, plastid	59.38	30.16
KRH24348	Soybean	nucleus	58.59	27.47
VIT_04s0023g03240.t01	Wine grape	nucleus	58.59	27.47
Solyc02g084000.2.1	Tomato	nucleus	51.56	24.63
TraesCS4A01G375100.1	Wheat	nucleus, plastid	57.81	24.1
TraesCS7A01G076700.1	Wheat	nucleus, plastid	57.81	23.95
Os06t0137300-01	Rice	nucleus	58.59	23.73
TraesCS7D01G072400.2	Wheat	nucleus	57.81	23.64
KRH39814	Soybean	cytosol, nucleus	4.69	4.88

Protein Annotations

EMBL:ACUP02001915	EnsemblPlants:KRH66164	EnsemblPlantsGene:GLYMA_03G087300	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005033	InterPro:YEATS	PANTHER:PTHR23195
PANTHER:PTHR23195:SF39	ProteinID:KRH66164	ProteinID:KRH66164.1	UniParc:UPI000296E119	UniProt:K7KDV4	MapMan:12.4.6.2
MapMan:15.3.5.3.14	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:25948283..25949854

Molecular Weight (calculated)

14805.6 Da

IEP (calculated)

5.575

GRAVY (calculated)

-0.318

Length

128 amino acids

Sequence
(BLAST)

001: MWQLLGLLKI QFPSTINYAY NLWTIYRYQH LKLYPEDESS PQSMKKLVVV ESYNEIVFPE PSEVFLAYVQ NHHVVNVPRL PAGLNLSSPI PSDTVNDKER
101: GDSKDHPLTQ WFLNFSEADE LLKLAAAR

Best Arabidopsis Sequence Match ( AT5G45600.1 )
(BLAST)

001: MTNSSSSKKQ AQDQPETSEP TLKSLKTKMT KSDEKQKKLK DIEISVPIVY GNVAFWLGKK ASEYQSHKWA VYVRGATNED ISVVVKKVVF QLHSSFNSPT
101: RVIEEPPFEV SESGWGEFEI AMTLHFHSDV CDKPLSLYHH LKLYPEDESG PLTMKKPVVV ESYDEIVFPD PSESFLARVQ NHPALTFPRL PSGYNLPAPM
201: QVEDTGKKKR GDTKDHSLGQ WFMSFSEADE LLQLAAARQQ VQAHIAKLRR QISLLEGQNQ TVKTGSDL

Arabidopsis Description

TAF14BTranscription initiation factor TFIID subunit 14b [Source:UniProtKB/Swiss-Prot;Acc:Q9FH40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.