Factsheet for TraesCS7D01G072400.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G375100.1	Wheat	nucleus, plastid	84.03	85.67
Zm00001d011122_P001	Maize	cytosol	65.81	84.08
Os06t0137300-01	Rice	nucleus	77.64	76.9
KXG19241	Sorghum	nucleus	60.06	76.42
GSMUA_Achr5P21340_001	Banana	cytosol, nucleus, plastid	60.06	74.6
GSMUA_Achr11P...	Banana	mitochondrion	57.51	74.38
KRH28792	Soybean	nucleus	59.11	66.31
KRH76662	Soybean	nucleus	58.79	65.95
VIT_04s0023g03240.t01	Wine grape	nucleus	55.27	63.37
Solyc02g084000.2.1	Tomato	nucleus	53.04	61.94
KRH66164	Soybean	extracellular, mitochondrion	23.64	57.81
KRH55119	Soybean	extracellular	23.96	48.7

Protein Annotations

EnsemblPlants:TraesCS7D01G072400.2	EnsemblPlantsGene:TraesCS7D01G072400	Gene3D:2.60.40.1970	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005033	InterPro:IPR038704	InterPro:YEAST_sf
InterPro:YEATS	ncoils:Coil	PANTHER:PTHR23195	PANTHER:PTHR23195:SF39	PFAM:PF03366	PFscan:PS51037
SEG:seg	MapMan:12.4.6.2	MapMan:15.3.5.3.14	:	:	:

Description

No Description!

Coordinates

chr7D:+:42680437..42683678

Molecular Weight (calculated)

34823.5 Da

IEP (calculated)

6.972

GRAVY (calculated)

-0.367

Length

313 amino acids

Sequence
(BLAST)

001: MEQPPSSPPP PAAATATAAP TPAPASAPII LSDSPPAAAA VAEPALTAAQ KALRSKPARA PEDPDKKNKK LKDVEISFPI VYGTISFWLG KKASEYNSHK
101: WTVYIRSATN EDLSVIVKRV VFQLHPSFTN PTRVVEQPPF ELSESGWGEF EIAITLYFHS DVCEKRLDLF HQLKLYPEED AGPQSTKKPV VVETYDEVVF
201: PEPTEAFFLR VQNHPAATVP RLPPGMTLSS PGPMELMSHD KKRFDTKDHS LSQWFSNFSE ADELLKLAAA RQQVQAHIAK LRRQLSMIEG MPQQSRVISG
301: LSWSTVWARL MEW

Best Arabidopsis Sequence Match ( AT5G45600.1 )
(BLAST)

001: MTNSSSSKKQ AQDQPETSEP TLKSLKTKMT KSDEKQKKLK DIEISVPIVY GNVAFWLGKK ASEYQSHKWA VYVRGATNED ISVVVKKVVF QLHSSFNSPT
101: RVIEEPPFEV SESGWGEFEI AMTLHFHSDV CDKPLSLYHH LKLYPEDESG PLTMKKPVVV ESYDEIVFPD PSESFLARVQ NHPALTFPRL PSGYNLPAPM
201: QVEDTGKKKR GDTKDHSLGQ WFMSFSEADE LLQLAAARQQ VQAHIAKLRR QISLLEGQNQ TVKTGSDL

Arabidopsis Description

TAF14BTranscription initiation factor TFIID subunit 14b [Source:UniProtKB/Swiss-Prot;Acc:Q9FH40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.