CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011122_P001	Maize	cytosol	84.55	84.9
GSMUA_Achr11P...	Banana	mitochondrion	71.14	72.31
GSMUA_Achr5P21340_001	Banana	cytosol, nucleus, plastid	70.33	68.65
Os06t0137300-01	Rice	nucleus	80.49	62.66
TraesCS4A01G375100.1	Wheat	nucleus, plastid	76.83	61.56
TraesCS7A01G076700.1	Wheat	nucleus, plastid	77.24	61.49
KRH28792	Soybean	nucleus	68.29	60.22
KRH76662	Soybean	nucleus	68.29	60.22
TraesCS7D01G072400.2	Wheat	nucleus	76.42	60.06
KRH66164	Soybean	extracellular, mitochondrion	30.89	59.38
VIT_04s0023g03240.t01	Wine grape	nucleus	65.45	58.97
Solyc02g084000.2.1	Tomato	nucleus	61.38	56.34
KRH55119	Soybean	extracellular	30.08	48.05

Protein Annotations

MapMan:12.4.6.2	MapMan:15.3.5.3.14	Gene3D:2.60.40.1970	UniProt:A0A194YI11	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR005033	InterPro:IPR038704	EnsemblPlants:KXG19241	ProteinID:KXG19241
ProteinID:KXG19241.1	PFAM:PF03366	PFscan:PS51037	PANTHER:PTHR23195	PANTHER:PTHR23195:SF39	EnsemblPlantsGene:SORBI_3010G027600
UniParc:UPI000220734C	InterPro:YEAST_sf	InterPro:YEATS	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:2259038..2262008

Molecular Weight (calculated)

28018.4 Da

IEP (calculated)

7.639

GRAVY (calculated)

-0.445

Length

246 amino acids

Sequence
(BLAST)

001: MSTQSKRLKD VEISFPIVYG TISFWLGKKA SEYNSHKWTV YVRSANNEDL SVIVKRVVFQ LHPSFQNPTR VVEQPPFELS ESGWGEFEIA ITLYFHSDVC
101: DKRLDLFHQL KLYPEEEAGP QSTKKPVVVE TYDEIVFPEP TEAFFQRVQN HPAANVPRLP PGITLPPPGS MEIVPYEKKR GDTKDHPLSQ WFSNFSEADE
201: LLKLAAARQQ PRHLSSACAP HPLLRLSACA PPQLLHPRAT TRCRLT

Best Arabidopsis Sequence Match ( AT5G45600.2 )
(BLAST)

001: MTNSSSSKKQ AQDQPETSEP TLKSLKTKMT KSDEKKKLKD IEISVPIVYG NVAFWLGKKA SEYQSHKWAV YVRGATNEDI SVVVKKVVFQ LHSSFNSPTR
101: VIEEPPFEVS ESGWGEFEIA MTLHFHSDVC DKPLSLYHHL KLYPEDESGP LTMKKPVVVE SYDEIVFPDP SESFLARVQN HPALTFPRLP SGYNLPAPMQ
201: VEDTGKKKRG DTKDHSLGQW FMSFSEADEL LQLAAARQQV QAHIAKLRRQ ISLLEGQNQT VKTGSDL

Arabidopsis Description

TAF14BTranscription initiation factor TFIID subunit 14b [Source:UniProtKB/Swiss-Prot;Acc:Q9FH40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.