Factsheet for GSMUA_Achr5P21340_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	mitochondrion	82.94	86.36
Zm00001d011122_P001	Maize	cytosol	76.19	78.37
KXG19241	Sorghum	nucleus	68.65	70.33
KRH76662	Soybean	nucleus	73.41	66.31
KRH28792	Soybean	nucleus	72.62	65.59
VIT_04s0023g03240.t01	Wine grape	nucleus	70.63	65.2
Os06t0137300-01	Rice	nucleus	78.97	62.97
TraesCS4A01G375100.1	Wheat	nucleus, plastid	75.0	61.56
TraesCS7A01G076700.1	Wheat	nucleus, plastid	75.4	61.49
Solyc02g084000.2.1	Tomato	nucleus	63.89	60.07
TraesCS7D01G072400.2	Wheat	nucleus	74.6	60.06
KRH66164	Soybean	extracellular, mitochondrion	30.16	59.38
KRH55119	Soybean	extracellular	30.16	49.35

Protein Annotations

MapMan:12.4.6.2	MapMan:15.3.5.3.14	Gene3D:2.60.40.1970	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr5G21340_001	EnsemblPlants:GSMUA_Achr5P21340_001	EnsemblPlants:GSMUA_Achr5T21340_001	InterPro:IPR005033
InterPro:IPR038704	UniProt:M0T0G3	PFAM:PF03366	PFscan:PS51037	PANTHER:PTHR23195	PANTHER:PTHR23195:SF39
UniParc:UPI0002954F18	InterPro:YEAST_sf	InterPro:YEATS	:	:	:

Description

transcription factor TFIIF, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G21340_001]

Coordinates

chr5:+:23407875..23415018

Molecular Weight (calculated)

28234.5 Da

IEP (calculated)

6.970

GRAVY (calculated)

-0.319

Length

252 amino acids

Sequence
(BLAST)

001: MISATPSSIR AQSSPPLVAT RRLKDVEISF PIVYGTIAFW LGKKATEYNS HKWTVYVRGA TNEDLSVIVK RAVFQLHSSF NNPTRVVESA PFELSESGWG
101: EFEIAITLFF HSDVCDKQLD LYHQLKLFPE EDSGPQSIKK PVVAETYDEI VFSEPSEAFF ARVQNHPAAI VPRLPSGLNL PAPGPIDHVN EKKRSDTKDH
201: PFSQWFMNFS EADELLKLAA ARQQVQAHIA KLRRQLSMID GLPQQSKAAS GQ

Best Arabidopsis Sequence Match ( AT5G45600.1 )
(BLAST)

001: MTNSSSSKKQ AQDQPETSEP TLKSLKTKMT KSDEKQKKLK DIEISVPIVY GNVAFWLGKK ASEYQSHKWA VYVRGATNED ISVVVKKVVF QLHSSFNSPT
101: RVIEEPPFEV SESGWGEFEI AMTLHFHSDV CDKPLSLYHH LKLYPEDESG PLTMKKPVVV ESYDEIVFPD PSESFLARVQ NHPALTFPRL PSGYNLPAPM
201: QVEDTGKKKR GDTKDHSLGQ WFMSFSEADE LLQLAAARQQ VQAHIAKLRR QISLLEGQNQ TVKTGSDL

Arabidopsis Description

TAF14BTranscription initiation factor TFIID subunit 14b [Source:UniProtKB/Swiss-Prot;Acc:Q9FH40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.