CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76662	Soybean	nucleus	97.85	97.85
GSMUA_Achr11P...	Banana	mitochondrion	64.87	74.79
KRH66164	Soybean	extracellular, mitochondrion	34.05	74.22
GSMUA_Achr5P21340_001	Banana	cytosol, nucleus, plastid	65.59	72.62
Zm00001d011122_P001	Maize	cytosol	63.44	72.24
KXG19241	Sorghum	nucleus	60.22	68.29
KRH24348	Soybean	nucleus	65.95	67.4
Solyc02g084000.2.1	Tomato	nucleus	64.16	66.79
KRH39814	Soybean	cytosol, nucleus	29.39	66.67
Os06t0137300-01	Rice	nucleus	68.46	60.44
KRH55119	Soybean	extracellular	33.33	60.39
TraesCS4A01G375100.1	Wheat	nucleus, plastid	65.95	59.93
TraesCS7A01G076700.1	Wheat	nucleus, plastid	66.31	59.87
TraesCS7D01G072400.2	Wheat	nucleus	66.31	59.11

Protein Annotations

EntrezGene:100799891	MapMan:12.4.6.2	MapMan:15.3.5.3.14	Gene3D:2.60.40.1970	EMBL:ACUP02006765	EnsemblPlantsGene:GLYMA_11G076700
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1LI12	InterPro:IPR005033
InterPro:IPR038704	EnsemblPlants:KRH28792	ProteinID:KRH28792	ProteinID:KRH28792.1	PFAM:PF03366	PFscan:PS51037
PANTHER:PTHR23195	PANTHER:PTHR23195:SF39	UniParc:UPI000233D828	InterPro:YEAST_sf	InterPro:YEATS	:

Description

hypothetical protein

Coordinates

chr11:+:5741103..5743755

Molecular Weight (calculated)

31255.0 Da

IEP (calculated)

6.515

GRAVY (calculated)

-0.461

Length

279 amino acids

Sequence
(BLAST)

001: MSNSNPLPLK RQGEQSSDDG ASAIKPSRLK IAIPSEDSDK KNANRRLKDV EICVPIVYGT IAFYLGRKAS ESQSHKWTVY VRGASNEDLG VVVKRVVFQL
101: HPSFNNPTRV VESPPFELSE CGWGEFEIAI TLYFHSDVCE KQLDLYHHLK LYPEDESGPQ STKKPVVVES YNEIVFPEPS EVFLARVQNH PAVNVPRLPA
201: GLNLPSPVPS DTVNDKERGD TKDHLLTQWF LNFSEADELL KLAAARQQVQ AHIVKLRRQL SLVEGLPQLS KPPSGYECT

Best Arabidopsis Sequence Match ( AT5G45600.2 )
(BLAST)

001: MTNSSSSKKQ AQDQPETSEP TLKSLKTKMT KSDEKKKLKD IEISVPIVYG NVAFWLGKKA SEYQSHKWAV YVRGATNEDI SVVVKKVVFQ LHSSFNSPTR
101: VIEEPPFEVS ESGWGEFEIA MTLHFHSDVC DKPLSLYHHL KLYPEDESGP LTMKKPVVVE SYDEIVFPDP SESFLARVQN HPALTFPRLP SGYNLPAPMQ
201: VEDTGKKKRG DTKDHSLGQW FMSFSEADEL LQLAAARQQV QAHIAKLRRQ ISLLEGQNQT VKTGSDL

Arabidopsis Description

TAF14BTranscription initiation factor TFIID subunit 14b [Source:UniProtKB/Swiss-Prot;Acc:Q9FH40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.