CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plastid
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28792	Soybean	nucleus	97.85	97.85
GSMUA_Achr11P...	Banana	mitochondrion	65.23	75.21
GSMUA_Achr5P21340_001	Banana	cytosol, nucleus, plastid	66.31	73.41
KRH66164	Soybean	extracellular, mitochondrion	33.33	72.66
Zm00001d011122_P001	Maize	cytosol	63.44	72.24
KXG19241	Sorghum	nucleus	60.22	68.29
Solyc02g084000.2.1	Tomato	nucleus	64.87	67.54
KRH24348	Soybean	nucleus	65.95	67.4
KRH39814	Soybean	cytosol, nucleus	29.39	66.67
Os06t0137300-01	Rice	nucleus	68.46	60.44
KRH55119	Soybean	extracellular	32.97	59.74
TraesCS4A01G375100.1	Wheat	nucleus, plastid	65.59	59.61
TraesCS7A01G076700.1	Wheat	nucleus, plastid	65.95	59.55
TraesCS7D01G072400.2	Wheat	nucleus	65.95	58.79

Protein Annotations

EntrezGene:100819921	MapMan:12.4.6.2	MapMan:15.3.5.3.14	Gene3D:2.60.40.1970	EMBL:ACUP02000634	EnsemblPlantsGene:GLYMA_01G166600
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005033	InterPro:IPR038704
UniProt:K7K485	EnsemblPlants:KRH76662	ProteinID:KRH76662	ProteinID:KRH76662.1	PFAM:PF03366	PFscan:PS51037
PANTHER:PTHR23195	PANTHER:PTHR23195:SF39	UniParc:UPI0002336B92	InterPro:YEAST_sf	InterPro:YEATS	:

Description

hypothetical protein

Coordinates

chr1:-:50443470..50446667

Molecular Weight (calculated)

31267.1 Da

IEP (calculated)

6.515

GRAVY (calculated)

-0.468

Length

279 amino acids

Sequence
(BLAST)

001: MSNSNPLPLK RQGEQSSDDG ASAIKLSRLK IAIPSEDSDK KNANRRLKDV EICVPIVYGT IAFYLGRKAS ESQSHKWTVY VRGASNEDLG VVVKRVVFQL
101: HPSFNNPTRV VESPPFELSE CGWGEFEIAI TLYFHPDVCE KQLDLYHHLK LYPEDESGPQ STKKPVVVES YNEIVFPEPS EGFLARVQNH PAVNVPRLPA
201: GLNLPSPVPI DTVNDKERGD TKDHPLTQWF MNFSEADELL KLAAARQQVQ AHIVKLRRQL SLVEGLPQLS KPPSGYECT

Best Arabidopsis Sequence Match ( AT5G45600.2 )
(BLAST)

001: MTNSSSSKKQ AQDQPETSEP TLKSLKTKMT KSDEKKKLKD IEISVPIVYG NVAFWLGKKA SEYQSHKWAV YVRGATNEDI SVVVKKVVFQ LHSSFNSPTR
101: VIEEPPFEVS ESGWGEFEIA MTLHFHSDVC DKPLSLYHHL KLYPEDESGP LTMKKPVVVE SYDEIVFPDP SESFLARVQN HPALTFPRLP SGYNLPAPMQ
201: VEDTGKKKRG DTKDHSLGQW FMSFSEADEL LQLAAARQQV QAHIAKLRRQ ISLLEGQNQT VKTGSDL

Arabidopsis Description

TAF14BTranscription initiation factor TFIID subunit 14b [Source:UniProtKB/Swiss-Prot;Acc:Q9FH40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.