Factsheet for Solyc02g084000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011122_P001	Maize	cytosol	59.33	64.9
KRH76662	Soybean	nucleus	67.54	64.87
VIT_04s0023g03240.t01	Wine grape	nucleus	65.67	64.47
GSMUA_Achr11P...	Banana	mitochondrion	58.21	64.46
KRH28792	Soybean	nucleus	66.79	64.16
GSMUA_Achr5P21340_001	Banana	cytosol, nucleus, plastid	60.07	63.89
KXG19241	Sorghum	nucleus	56.34	61.38
Solyc04g077290.1.1	Tomato	nucleus	62.69	61.31
Os06t0137300-01	Rice	nucleus	64.55	54.75
TraesCS4A01G375100.1	Wheat	nucleus, plastid	60.82	53.09
TraesCS7A01G076700.1	Wheat	nucleus, plastid	61.19	53.07
TraesCS7D01G072400.2	Wheat	nucleus	61.94	53.04
KRH66164	Soybean	extracellular, mitochondrion	24.63	51.56
KRH55119	Soybean	extracellular	27.61	48.05

Protein Annotations

MapMan:12.4.6.2	MapMan:15.3.5.3.14	Gene3D:2.60.40.1970	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791
GO:GO:0009908	GO:GO:0009909	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0035267
GO:GO:0043981	GO:GO:0048510	GO:GO:2000028	InterPro:IPR005033	InterPro:IPR038704	UniProt:K4BAR8
PFAM:PF03366	PFscan:PS51037	PANTHER:PTHR23195	PANTHER:PTHR23195:SF39	EnsemblPlantsGene:Solyc02g084000.2	EnsemblPlants:Solyc02g084000.2.1
UniParc:UPI0002768896	InterPro:YEAST_sf	InterPro:YEATS	SEG:seg	:	:

Description

Transcription initiation factor TFIID subunit 14 [Source:Projected from Arabidopsis thaliana (AT2G18000) UniProtKB/Swiss-Prot;Acc:F4IPK2]

Coordinates

chr2:+:47222379..47225652

Molecular Weight (calculated)

30569.3 Da

IEP (calculated)

6.441

GRAVY (calculated)

-0.503

Length

268 amino acids

Sequence
(BLAST)

001: MPLNSPNDSE HGGNESDPRL HLTKIANPSE DFEKKTSSKR LKDVEIYVPI VFGTIAFWLG KKATETQSHR WSVYVRGATN EDLSGVIKKV VFQLHPSFNN
101: PVRVVESPPF ELSECGWGEF EIAISLLFHD DVGEKKLDLY HHLKLYAENE PGPQSTKKPI VVETYNEIVF PDPPEDFFSR IQNHPSVVVP RLPTTFKLPP
201: APIEDLHALK RGDTKNHPLS QWFINFSEAD ELLKLTAARQ RVQAHIVKLR RQLSVMDELP QTFKLDSD

Best Arabidopsis Sequence Match ( AT5G45600.2 )
(BLAST)

001: MTNSSSSKKQ AQDQPETSEP TLKSLKTKMT KSDEKKKLKD IEISVPIVYG NVAFWLGKKA SEYQSHKWAV YVRGATNEDI SVVVKKVVFQ LHSSFNSPTR
101: VIEEPPFEVS ESGWGEFEIA MTLHFHSDVC DKPLSLYHHL KLYPEDESGP LTMKKPVVVE SYDEIVFPDP SESFLARVQN HPALTFPRLP SGYNLPAPMQ
201: VEDTGKKKRG DTKDHSLGQW FMSFSEADEL LQLAAARQQV QAHIAKLRRQ ISLLEGQNQT VKTGSDL

Arabidopsis Description

TAF14BTranscription initiation factor TFIID subunit 14b [Source:UniProtKB/Swiss-Prot;Acc:Q9FH40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.