Factsheet for Solyc04g077290.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g060030.2.1
Solyc02g078300.2.1
Solyc03g122020.2.1
Solyc06g036200.1.1
Solyc06g062900.2.1
Solyc06g065700.2.1
Solyc07g006820.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45600.1	Solyc02g078300.2.1	AT1G02680.1	17340043
AT5G45600.1	Solyc06g036200.1.1	AT1G02680.1	17340043
AT5G45600.1	Solyc03g122020.2.1	AT1G17440.1	17340043
AT5G45600.1	Solyc06g062900.2.1	AT1G17440.1	17340043
AT5G45600.1	Solyc07g006820.2.1	AT1G32750.1	17340043
AT5G45600.1	Solyc06g065700.2.1	AT5G25150.1	17340043
AT5G45600.1	Solyc01g060030.2.1	AT5G49400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012607	Potato	nucleus	97.08	97.08
VIT_03s0038g00960.t01	Wine grape	cytosol, nucleus, peroxisome	73.72	73.99
KRH24348	Soybean	nucleus	72.63	72.89
AT5G45600.1	Thale cress	nucleus	69.71	71.27
Bra025069.1-P	Field mustard	nucleus	67.15	70.5
CDY39435	Canola	nucleus	67.15	70.5
CDY38963	Canola	nucleus	67.52	69.29
Solyc02g084000.2.1	Tomato	nucleus	61.31	62.69

Protein Annotations

MapMan:12.4.6.2	MapMan:15.3.5.3.14	Gene3D:2.60.40.1970	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791
GO:GO:0009908	GO:GO:0009909	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0035267
GO:GO:0043981	GO:GO:0048510	GO:GO:0090239	GO:GO:2000028	InterPro:IPR005033	InterPro:IPR038704
UniProt:K4BUG6	PFAM:PF03366	PFscan:PS51037	PANTHER:PTHR23195	PANTHER:PTHR23195:SF39	EnsemblPlantsGene:Solyc04g077290.1
EnsemblPlants:Solyc04g077290.1.1	UniParc:UPI0002766469	InterPro:YEAST_sf	InterPro:YEATS	SEG:seg	:

Description

Transcription initiation factor TFIID subunit 14b [Source:Projected from Arabidopsis thaliana (AT5G45600) UniProtKB/Swiss-Prot;Acc:Q9FH40]

Coordinates

chr4:-:62255294..62256118

Molecular Weight (calculated)

30919.4 Da

IEP (calculated)

6.749

GRAVY (calculated)

-0.657

Length

274 amino acids

Sequence
(BLAST)

001: MPQSSSTKKH DQDPTDSTGP TLKSQRTKMV NTSDDSEKKS SDKKLKELEV GVPIVYGNVA FWLGKKASEF QSHKWTIYVR GATNEDLGVV VKRVVFQLHS
101: SFNNPTRVVD NPPFELSESG WGEFEIVMTL HFHTDVCDKP LHLYHHLKLY PEDESGALST KKPVVVESYD EIVFAEPSES FFARVQNNPA VNVPRLPPGL
201: NLPPPVPIED VDQRKRGDTK DHPLSQWFTN FSEADELLKL TAARQQVQGH IARLRRQLST VDGQHQQLKP ASDL

Best Arabidopsis Sequence Match ( AT5G45600.1 )
(BLAST)

001: MTNSSSSKKQ AQDQPETSEP TLKSLKTKMT KSDEKQKKLK DIEISVPIVY GNVAFWLGKK ASEYQSHKWA VYVRGATNED ISVVVKKVVF QLHSSFNSPT
101: RVIEEPPFEV SESGWGEFEI AMTLHFHSDV CDKPLSLYHH LKLYPEDESG PLTMKKPVVV ESYDEIVFPD PSESFLARVQ NHPALTFPRL PSGYNLPAPM
201: QVEDTGKKKR GDTKDHSLGQ WFMSFSEADE LLQLAAARQQ VQAHIAKLRR QISLLEGQNQ TVKTGSDL

Arabidopsis Description

TAF14BTranscription initiation factor TFIID subunit 14b [Source:UniProtKB/Swiss-Prot;Acc:Q9FH40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.