Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra025069.1-P Field mustard nucleus 100.0 100.0
CDY38963 Canola nucleus 97.7 95.51
AT5G45600.1 Thale cress nucleus 93.1 90.67
KRH24348 Soybean nucleus 75.1 71.79
VIT_03s0038g00960.t01 Wine grape cytosol, nucleus, peroxisome 72.41 69.23
Solyc04g077290.1.1 Tomato nucleus 70.5 67.15
PGSC0003DMT400012607 Potato nucleus 70.11 66.79
CDY56588 Canola cytosol 50.19 51.17
CDY38168 Canola cytosol 49.43 50.0
CDY54552 Canola cytosol, extracellular 12.64 38.82
Protein Annotations
MapMan:12.4.6.2MapMan:15.3.5.3.14Gene3D:2.60.40.1970GO:A0A078HLU6UniProt:A0A078HLU6EnsemblPlants:CDY39435
ProteinID:CDY39435ProteinID:CDY39435.1ncoils:CoilGO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00067897001InterPro:IPR005033InterPro:IPR038704PFAM:PF03366PFscan:PS51037
PANTHER:PTHR23195PANTHER:PTHR23195:SF39UniParc:UPI000253FC54InterPro:YEAST_sfInterPro:YEATSSEG:seg
Description
BnaAnng05660DBnaAnng05660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLU6]
Coordinates
chrLK032447:+:239410..240994
Molecular Weight (calculated)
29628.2 Da
IEP (calculated)
6.864
GRAVY (calculated)
-0.595
Length
261 amino acids
Sequence
(BLAST)
001: MTKQAQDPPE TSEPTLKSLR TKMTKSDEKK KLKDIEISVP LVYGNIAYWL GKKASEYQSH KWTVYVRGAT NEDISVVIKK VVFQLHSSFN NPTRVIEEPP
101: FEVSESGWGE FEIAITLHFH SDVCDKPLSL YHHLKLYPED ESGPLTMKKP VVVEHYDEIV FPDPCESFLA RVQNHPALTF PRLPSGYNLP APMQVDDNGK
201: KKRGDTKDHS LGQWFTSFSE ADELLQLAAA RQQVQAHIAK LRRQISLLEG QNQTIKTGSD P
Best Arabidopsis Sequence Match ( AT5G45600.2 )
(BLAST)
001: MTNSSSSKKQ AQDQPETSEP TLKSLKTKMT KSDEKKKLKD IEISVPIVYG NVAFWLGKKA SEYQSHKWAV YVRGATNEDI SVVVKKVVFQ LHSSFNSPTR
101: VIEEPPFEVS ESGWGEFEIA MTLHFHSDVC DKPLSLYHHL KLYPEDESGP LTMKKPVVVE SYDEIVFPDP SESFLARVQN HPALTFPRLP SGYNLPAPMQ
201: VEDTGKKKRG DTKDHSLGQW FMSFSEADEL LQLAAARQQV QAHIAKLRRQ ISLLEGQNQT VKTGSDL
Arabidopsis Description
TAF14BTranscription initiation factor TFIID subunit 14b [Source:UniProtKB/Swiss-Prot;Acc:Q9FH40]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.