CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38168	Canola	cytosol	95.31	94.57
AT2G18000.2	Thale cress	cytosol	69.14	66.04
CDY54552	Canola	cytosol, extracellular	18.75	56.47
CDY39435	Canola	nucleus	51.17	50.19
CDY38963	Canola	nucleus	51.56	49.44

Protein Annotations

MapMan:12.4.6.2	MapMan:15.3.5.3.14	Gene3D:2.60.40.1970	GO:A0A078IXE7	UniProt:A0A078IXE7	EnsemblPlants:CDY56588
ProteinID:CDY56588	ProteinID:CDY56588.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00019768001	InterPro:IPR005033	InterPro:IPR038704	PFAM:PF03366	PFscan:PS51037
PANTHER:PTHR23195	PANTHER:PTHR23195:SF39	UniParc:UPI0004EDCAAD	InterPro:YEAST_sf	InterPro:YEATS	:

Description

BnaC07g48130DBnaC07g48130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXE7]

Coordinates

chrLK033502:+:45045..46279

Molecular Weight (calculated)

28961.5 Da

IEP (calculated)

7.010

GRAVY (calculated)

-0.438

Length

256 amino acids

Sequence
(BLAST)

001: MEDSAVEILS ASTPKPRIGI DGGDDNKNWR RRVNGVEVSV PIVCGSIAFY RGKKAKEYRT HNWTVYVRGA TNEDLGVVIR KVIFHLHPSF KSPTRVVDSP
101: PFTLSECGWG EFKIDITIFF HADACERKLE LSHLLKLNPE IYSGPQSPNV PVVTESYNEI VFPDPFECFL SRVNNHPAVH VSKLPEGLNL PPPGDADDES
201: YYKMKKGDTK DHPLSHWFLK FSDADELFRL TATRQKVQAD IAKLKRQLVM VDAQPE

Best Arabidopsis Sequence Match ( AT2G18000.2 )
(BLAST)

001: MESDIEILSE ADASMRKLRI FGIDDREDEN GRRRIKDVEV YVPIVCGSIA FYLGKKATEY RTHKWTVYVR GATNEDLGVV IKRVIFHLHP SFNNPTRVVD
101: APPFALSECG WGEFKIDITV FFHTDVCEKK LELSHVLKLN PENAYGPIPK SIKIPVVAES YNEVVFPDPF ESFVARVHNH PAIQISNIPD GLNLPPPGVA
201: DTYYLMEKGD TKEHPLSPWF LKFSEVEELF KLTAARQKVQ ADIAKLKRQL IMVDGQPEGL ESSSGYEC

Arabidopsis Description

TAF14Transcription initiation factor TFIID subunit 14 [Source:UniProtKB/Swiss-Prot;Acc:F4IPK2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.