CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039907.1-P	Field mustard	cytosol	97.67	97.67
CDY56588	Canola	cytosol	94.57	95.31
AT2G18000.2	Thale cress	cytosol	67.05	64.55
CDY54552	Canola	cytosol, extracellular	18.22	55.29
CDY39435	Canola	nucleus	50.0	49.43
CDY38963	Canola	nucleus	50.39	48.69

Protein Annotations

MapMan:12.4.6.2	MapMan:15.3.5.3.14	Gene3D:2.60.40.1970	GO:A0A078HMY0	UniProt:A0A078HMY0	EnsemblPlants:CDY38168
ProteinID:CDY38168	ProteinID:CDY38168.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00065472001	InterPro:IPR005033	InterPro:IPR038704	PFAM:PF03366	PFscan:PS51037
PANTHER:PTHR23195	PANTHER:PTHR23195:SF39	UniParc:UPI0004EE2FE3	InterPro:YEAST_sf	InterPro:YEATS	:

Description

BnaA07g02150DBnaA07g02150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMY0]

Coordinates

chrLK032417:+:261820..263080

Molecular Weight (calculated)

29304.7 Da

IEP (calculated)

6.855

GRAVY (calculated)

-0.464

Length

258 amino acids

Sequence
(BLAST)

001: MEDSHVERFS ASTPKPRVGI DGGDDNKNWR RRVNGVEVSV PIVCGSIAFF RGKKAKEYRT HNWTVYVRGA TNEDLGAVIR KVIFHLHPSF KSPTRVVDSP
101: PFTLSECGWG EFKIDITIFF HADACERKLE LSHLLKLNPE IYSGPQSPNV PVVTESYNEI VFPDPFECFL SRVYNHPAVH VSMLPEGLNL PPPGDAGDES
201: YYKMKKGDTK DHPLSHWFSK FSEADELFRL TATRQKVQAD IAELKRQLVM VDAQPEQF

Best Arabidopsis Sequence Match ( AT2G18000.2 )
(BLAST)

001: MESDIEILSE ADASMRKLRI FGIDDREDEN GRRRIKDVEV YVPIVCGSIA FYLGKKATEY RTHKWTVYVR GATNEDLGVV IKRVIFHLHP SFNNPTRVVD
101: APPFALSECG WGEFKIDITV FFHTDVCEKK LELSHVLKLN PENAYGPIPK SIKIPVVAES YNEVVFPDPF ESFVARVHNH PAIQISNIPD GLNLPPPGVA
201: DTYYLMEKGD TKEHPLSPWF LKFSEVEELF KLTAARQKVQ ADIAKLKRQL IMVDGQPEGL ESSSGYEC

Arabidopsis Description

TAF14Transcription initiation factor TFIID subunit 14 [Source:UniProtKB/Swiss-Prot;Acc:F4IPK2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.