Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39435 | Canola | nucleus | 95.51 | 97.7 |
| AT5G45600.1 | Thale cress | nucleus | 93.63 | 93.28 |
| KRH24348 | Soybean | nucleus | 74.91 | 73.26 |
| VIT_03s0038g00960.t01 | Wine grape | cytosol, nucleus, peroxisome | 71.54 | 69.96 |
| Solyc04g077290.1.1 | Tomato | nucleus | 69.29 | 67.52 |
| PGSC0003DMT400012607 | Potato | nucleus | 68.91 | 67.15 |
| CDY56588 | Canola | cytosol | 49.44 | 51.56 |
| CDY38168 | Canola | cytosol | 48.69 | 50.39 |
| CDY54552 | Canola | cytosol, extracellular | 12.36 | 38.82 |
Protein Annotations
| MapMan:12.4.6.2 | MapMan:15.3.5.3.14 | Gene3D:2.60.40.1970 | GO:A0A078HQB1 | UniProt:A0A078HQB1 | EnsemblPlants:CDY38963 |
| ProteinID:CDY38963 | ProteinID:CDY38963.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00067016001 | InterPro:IPR005033 | InterPro:IPR038704 | PFAM:PF03366 | PFscan:PS51037 |
| PANTHER:PTHR23195 | PANTHER:PTHR23195:SF39 | UniParc:UPI0004EBC3EE | InterPro:YEAST_sf | InterPro:YEATS | SEG:seg |
Description
BnaC07g18570DBnaC07g18570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQB1]
Coordinates
chrLK032436:-:8574..10169
Molecular Weight (calculated)
30101.6 Da
IEP (calculated)
7.089
GRAVY (calculated)
-0.632
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSSSSKKQ AQDPPETSEP TLKSLRTKMT KSDEKKKLKD IEISVPLVYG NIASWLGKKA SEYQSHKWSV YVRGATNEDI SVVIKKVVFQ LHSSFNNPTR
101: VIEEPPFEVS ESGWGEFEIA ITLHFHSDVC DKPLSLYHHL KLYPEDESGP LTMKKPVVVE HYDEIVFPDP SESFLSRVQN HPALTFPRLP SGYNLPAPMQ
201: VDDNGKKKRG DTKDHSLGQW FTSFSEADEL LQLAAARQQV QAHIAKLRRQ ISLLEGQNQT IKTGSDP
101: VIEEPPFEVS ESGWGEFEIA ITLHFHSDVC DKPLSLYHHL KLYPEDESGP LTMKKPVVVE HYDEIVFPDP SESFLSRVQN HPALTFPRLP SGYNLPAPMQ
201: VDDNGKKKRG DTKDHSLGQW FTSFSEADEL LQLAAARQQV QAHIAKLRRQ ISLLEGQNQT IKTGSDP
001: MTNSSSSKKQ AQDQPETSEP TLKSLKTKMT KSDEKKKLKD IEISVPIVYG NVAFWLGKKA SEYQSHKWAV YVRGATNEDI SVVVKKVVFQ LHSSFNSPTR
101: VIEEPPFEVS ESGWGEFEIA MTLHFHSDVC DKPLSLYHHL KLYPEDESGP LTMKKPVVVE SYDEIVFPDP SESFLARVQN HPALTFPRLP SGYNLPAPMQ
201: VEDTGKKKRG DTKDHSLGQW FMSFSEADEL LQLAAARQQV QAHIAKLRRQ ISLLEGQNQT VKTGSDL
101: VIEEPPFEVS ESGWGEFEIA MTLHFHSDVC DKPLSLYHHL KLYPEDESGP LTMKKPVVVE SYDEIVFPDP SESFLARVQN HPALTFPRLP SGYNLPAPMQ
201: VEDTGKKKRG DTKDHSLGQW FMSFSEADEL LQLAAARQQV QAHIAKLRRQ ISLLEGQNQT VKTGSDL
Arabidopsis Description
TAF14BTranscription initiation factor TFIID subunit 14b [Source:UniProtKB/Swiss-Prot;Acc:Q9FH40]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.