CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56588	Canola	cytosol	56.47	18.75
CDY38168	Canola	cytosol	55.29	18.22
CDY39435	Canola	nucleus	38.82	12.64
CDY38963	Canola	nucleus	38.82	12.36
KRH39814	Soybean	cytosol, nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY54552	EnsemblPlantsGene:GSBRNA2T00014295001	GO:A0A078ITQ7	GO:GO:0005575	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
InterPro:IPR005033	InterPro:YEATS	PANTHER:PTHR23195	PANTHER:PTHR23195:SF39	ProteinID:CDY54552	ProteinID:CDY54552.1
TMHMM:TMhelix	UniParc:UPI0004EDB6E9	UniProt:A0A078ITQ7	MapMan:35.2	:	:

Description

BnaCnng27290DBnaCnng27290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITQ7]

Coordinates

chrLK033329:-:38224..38902

Molecular Weight (calculated)

10202.2 Da

IEP (calculated)

4.107

GRAVY (calculated)

0.107

Length

85 amino acids

Sequence
(BLAST)

1: MAEYYSEIVF PDPFESFFTY VCYYLAVHIS NLPLGAFLLW CLLTYYEMTK VDNKDNSVCV WFLKFSDADE LKRQLIMVDR QPEEF

Best Arabidopsis Sequence Match ( AT2G18000.2 )
(BLAST)

001: MESDIEILSE ADASMRKLRI FGIDDREDEN GRRRIKDVEV YVPIVCGSIA FYLGKKATEY RTHKWTVYVR GATNEDLGVV IKRVIFHLHP SFNNPTRVVD
101: APPFALSECG WGEFKIDITV FFHTDVCEKK LELSHVLKLN PENAYGPIPK SIKIPVVAES YNEVVFPDPF ESFVARVHNH PAIQISNIPD GLNLPPPGVA
201: DTYYLMEKGD TKEHPLSPWF LKFSEVEELF KLTAARQKVQ ADIAKLKRQL IMVDGQPEGL ESSSGYEC

Arabidopsis Description

TAF14Transcription initiation factor TFIID subunit 14 [Source:UniProtKB/Swiss-Prot;Acc:F4IPK2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.