CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24348	Soybean	nucleus	92.68	41.76
KRH28792	Soybean	nucleus	66.67	29.39
KRH76662	Soybean	nucleus	66.67	29.39
AT2G18000.2	Thale cress	cytosol	52.03	23.88
Bra039907.1-P	Field mustard	cytosol	46.34	22.09
KRH66164	Soybean	extracellular, mitochondrion	4.88	4.69
KRH55119	Soybean	extracellular	1.63	1.3
CDY54552	Canola	cytosol, extracellular	0.0	0.0

Protein Annotations

MapMan:12.4.6.2	MapMan:15.3.5.3.14	Gene3D:2.60.40.1970	UniProt:A0A0R0IBU1	EMBL:ACUP02005959	EnsemblPlantsGene:GLYMA_09G222100
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005033	InterPro:IPR038704
EnsemblPlants:KRH39814	ProteinID:KRH39814	ProteinID:KRH39814.1	PFAM:PF03366	PFscan:PS51037	PANTHER:PTHR23195
PANTHER:PTHR23195:SF39	UniParc:UPI0006ED5E09	InterPro:YEAST_sf	InterPro:YEATS	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:+:44294720..44295502

Molecular Weight (calculated)

13945.4 Da

IEP (calculated)

8.917

GRAVY (calculated)

-0.706

Length

123 amino acids

Sequence
(BLAST)

001: HRQEQPEFSG PTPKSQRTKM GKSEDNDKKN LGKKLKDVEI SIPIVYGNIA IWLGKKASEY QSHKWTVNVR GATNEDLGTI IKHAVFQLHS SFNNPTRVVE
101: SPPFELSESG WGEFEVAITL YFQ

Best Arabidopsis Sequence Match ( AT5G45600.1 )
(BLAST)

001: MTNSSSSKKQ AQDQPETSEP TLKSLKTKMT KSDEKQKKLK DIEISVPIVY GNVAFWLGKK ASEYQSHKWA VYVRGATNED ISVVVKKVVF QLHSSFNSPT
101: RVIEEPPFEV SESGWGEFEI AMTLHFHSDV CDKPLSLYHH LKLYPEDESG PLTMKKPVVV ESYDEIVFPD PSESFLARVQ NHPALTFPRL PSGYNLPAPM
201: QVEDTGKKKR GDTKDHSLGQ WFMSFSEADE LLQLAAARQQ VQAHIAKLRR QISLLEGQNQ TVKTGSDL

Arabidopsis Description

TAF14BTranscription initiation factor TFIID subunit 14b [Source:UniProtKB/Swiss-Prot;Acc:Q9FH40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.