Factsheet for PGSC0003DMT400012607

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006601
PGSC0003DMT400012398
PGSC0003DMT400076353

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45600.1	PGSC0003DMT400076353	AT1G02680.1	17340043
AT5G45600.1	PGSC0003DMT400006601	AT1G17440.1	17340043
AT5G45600.1	PGSC0003DMT400012398	AT1G17440.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g077290.1.1	Tomato	nucleus	97.08	97.08
VIT_03s0038g00960.t01	Wine grape	cytosol, nucleus, peroxisome	73.72	73.99
KRH24348	Soybean	nucleus	72.63	72.89
AT5G45600.1	Thale cress	nucleus	69.34	70.9
Bra025069.1-P	Field mustard	nucleus	66.79	70.11
CDY39435	Canola	nucleus	66.79	70.11
CDY38963	Canola	nucleus	67.15	68.91

Protein Annotations

EntrezGene:102605551	MapMan:12.4.6.2	MapMan:15.3.5.3.14	Gene3D:2.60.40.1970	GO:GO:0000003	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006355
GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0035267	GO:GO:0043981	GO:GO:0048510	GO:GO:0090239	GO:GO:2000028	InterPro:IPR005033
InterPro:IPR038704	UniProt:M1A1I6	PFAM:PF03366	EnsemblPlantsGene:PGSC0003DMG400004929	PGSC:PGSC0003DMG400004929	EnsemblPlants:PGSC0003DMT400012607
PFscan:PS51037	PANTHER:PTHR23195	PANTHER:PTHR23195:SF39	UniParc:UPI0002957F2B	RefSeq:XP_006356824.1	InterPro:YEAST_sf
InterPro:YEATS	SEG:seg	:	:	:	:

Description

YEATS domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004929]

Coordinates

chr4:-:66368442..66373450

Molecular Weight (calculated)

30882.6 Da

IEP (calculated)

6.973

GRAVY (calculated)

-0.591

Length

274 amino acids

Sequence
(BLAST)

001: MPQSSSTKTH DQDPTDITGP TLKSQRTKMV NTSDDSEKKS SGKKLKELEV GVPIVYGNVA FWLGKKASEF QSHKWTIYVR GATNEDLGVV VKRVVFQLHS
101: SFNNPTRVVD NPPFELTESG WGEFEIVMTL HFHTDVCDKP LHLYHHLKLY PEDESGALST KKPVVVESYD EIVFAEPSES FFARVQNHPA VNVPRLPPGL
201: NLPPPVPIED VDRRKRGDTK DHPLSQLFTN FSEADELLKL TAARQQVQGH IARLRRQLSM VDGQHQQLKP ASDL

Best Arabidopsis Sequence Match ( AT5G45600.1 )
(BLAST)

001: MTNSSSSKKQ AQDQPETSEP TLKSLKTKMT KSDEKQKKLK DIEISVPIVY GNVAFWLGKK ASEYQSHKWA VYVRGATNED ISVVVKKVVF QLHSSFNSPT
101: RVIEEPPFEV SESGWGEFEI AMTLHFHSDV CDKPLSLYHH LKLYPEDESG PLTMKKPVVV ESYDEIVFPD PSESFLARVQ NHPALTFPRL PSGYNLPAPM
201: QVEDTGKKKR GDTKDHSLGQ WFMSFSEADE LLQLAAARQQ VQAHIAKLRR QISLLEGQNQ TVKTGSDL

Arabidopsis Description

TAF14BTranscription initiation factor TFIID subunit 14b [Source:UniProtKB/Swiss-Prot;Acc:Q9FH40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.