Factsheet for PGSC0003DMT400012398

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006601
PGSC0003DMT400009911
PGSC0003DMT400012398
PGSC0003DMT400012607
PGSC0003DMT400023148
PGSC0003DMT400048896
PGSC0003DMT400050569
PGSC0003DMT400055395
PGSC0003DMT400076353

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17440.1	PGSC0003DMT400076353	AT1G02680.1	17340043
AT1G17440.1	PGSC0003DMT400006601	AT1G17440.1	17340043
AT1G17440.1	PGSC0003DMT400012398	AT1G17440.1	17340043
AT1G17440.1	PGSC0003DMT400055395	AT1G27720.1	17340043
AT1G17440.1	PGSC0003DMT400048896	AT1G50300.1	17340043
AT1G17440.1	PGSC0003DMT400023148	AT3G10070.1	17340043
AT1G17440.1	PGSC0003DMT400050569	AT4G20280.1	17340043
AT1G17440.1	PGSC0003DMT400009911	AT4G34340.1	17340043
AT1G17440.1	PGSC0003DMT400012607	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g062900.2.1	Tomato	nucleus	91.58	72.5
KRH06174	Soybean	nucleus, plastid	53.16	28.94
VIT_09s0002g01420.t01	Wine grape	nucleus, plastid	59.47	19.25
PGSC0003DMT400006601	Potato	nucleus, plastid	64.21	19.09
KRH47589	Soybean	nucleus, plastid	56.84	18.03
CDY21749	Canola	plastid	51.05	17.32
CDX81826	Canola	plastid	48.95	17.29
Zm00001d042879_P002	Maize	plastid	42.63	17.09
Bra025975.1-P	Field mustard	plastid	55.79	16.38
CDY26245	Canola	plastid	55.79	16.28
GSMUA_Achr7P10670_001	Banana	plastid	53.16	15.71
Bra030989.1-P	Field mustard	plastid	50.0	15.6
CDY48302	Canola	plastid	48.42	15.54
AT1G17440.1	Thale cress	plastid	55.26	15.37
Os01t0846900-01	Rice	nucleus	43.68	15.31
TraesCS6D01G151600.1	Wheat	nucleus, plastid	32.63	14.83
Zm00001d012396_P003	Maize	nucleus, plastid	42.63	14.7
TraesCS3B01G395300.2	Wheat	nucleus, plastid	41.05	14.47
KXG33694	Sorghum	nucleus, plastid	42.11	14.44
TraesCS3D01G356600.1	Wheat	nucleus, plastid	41.05	14.39
HORVU6Hr1G032840.2	Barley	nucleus, plastid	31.58	14.32
TraesCS3A01G362900.1	Wheat	nucleus, plastid	41.05	14.31
HORVU3Hr1G085840.7	Barley	cytosol, mitochondrion, nucleus	40.53	13.49
PGSC0003DMT400023148	Potato	nucleus, plastid	33.68	11.41
TraesCS6A01G161300.1	Wheat	nucleus, plastid	15.79	7.14
TraesCS6B01G190100.1	Wheat	nucleus, plastid	14.74	6.7

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	GO:GO:0000124	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046695	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	UniProt:M1A173
PFAM:PD012998	PFAM:PF03847	EnsemblPlantsGene:PGSC0003DMG402004858	PGSC:PGSC0003DMG402004858	EnsemblPlants:PGSC0003DMT400012398	PANTHER:PTHR12264
PANTHER:PTHR12264:SF3	SUPFAM:SSF47113	InterPro:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI0002962591	SEG:seg

Description

TATA binding protein associated factor [Source:PGSC_GENE;Acc:PGSC0003DMG402004858]

Coordinates

chr6:-:48532046..48541820

Molecular Weight (calculated)

20210.2 Da

IEP (calculated)

4.240

GRAVY (calculated)

-0.565

Length

190 amino acids

Sequence
(BLAST)

001: MDFPSDHNSL SLTGSEPDAT GSGTTTPGSS SSLGTEASNQ FLGKRKIQDL VSQVDPQGKV DPEVEQLLLE IADDFIDSVT TFACNLAKHR KSSTLESKDI
101: LLHLEKDWNL TVPGFSSEDK KHHPEHSGDL CKERLEMIPA MMEASPQAET STSSSAKETV SPGLGDQVGS TDIIGPPSSE ELASPSNGEI

Best Arabidopsis Sequence Match ( AT1G17440.1 )
(BLAST)

001: MAEPIPSSSL SPKSLQSPNP MEPSPASSTP LPSSSSQQQQ LMTAPISNSV NSAASPAMTV TTTEGIVIQN NSQPNISSPN PTSSNPPIGA QIPSPSPLSH
101: PSSSLDQQTQ TQQLVQQTQQ LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQIAQSLQ RSPSLSRLSQ IQQQQQQQHQ GQYGNVLRQQ
201: AGLYGTMNFG GSGSVQQSQQ NQQMVNPNMS RAGLVGQSGH LPMLNGAAGA AQMNIQPQLL AASPRQKSGM VQGSQFHPGS SGQQLQGMQA MGMMGSLNLT
301: SQMRGNPALY AQQRINPGQM RQQLSQQNAL TSPQVQNLQR TSSLAFMNPQ LSGLAQNGQA GMMQNSLSQQ QWLKQMSGIT SPNSFRLQPS QRQALLLQQQ
401: QQQQQQLSSP QLHQSSMSLN QQQISQIIQQ QQQQSQLGQS QMNQSHSQQQ LQQMQQQLQQ QPQQQMQQQQ QQQQQMQINQ QQPSPRMLSH AGQKSVSLTG
501: SQPEATQSGT TTPGGSSSQG TEATNQLLGK RKIQDLVSQV DVHAKLDPDV EDLLLEVADD FIDSVTSFAC SLAKHRKSSV LEPKDILLHL EKNLHLTIPG
601: FSSEDKRQTK TVPTDLHKKR LAMVRALLES SKPETNASNS KETMRQAMVN PNGPNHLLRP SQSSEQLVSQ TSGPHILQHM TRY

Arabidopsis Description

TAF12BTranscription initiation factor TFIID subunit 12b [Source:UniProtKB/Swiss-Prot;Acc:Q940A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.