Factsheet for HORVU6Hr1G032840.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G022460.1
HORVU1Hr1G024140.1
HORVU3Hr1G062710.1
HORVU3Hr1G084430.4
HORVU3Hr1G085840.7
HORVU4Hr1G034590.13
HORVU5Hr1G054500.18
HORVU6Hr1G032840.2
HORVU6Hr1G062340.1
HORVU7Hr1G006990.9
HORVU7Hr1G113760.2
HORVU7Hr1G115120.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17440.1	HORVU1Hr1G024140.1	AT1G02680.1	17340043
AT1G17440.1	HORVU3Hr1G085840.7	AT1G17440.1	17340043
AT1G17440.1	HORVU6Hr1G032840.2	AT1G17440.1	17340043
AT1G17440.1	HORVU4Hr1G034590.13	AT1G27720.1	17340043
AT1G17440.1	HORVU6Hr1G062340.1	AT1G27720.1	17340043
AT1G17440.1	HORVU7Hr1G115120.1	AT1G32750.1	17340043
AT1G17440.1	HORVU5Hr1G054500.18	AT1G50300.1	17340043
AT1G17440.1	HORVU3Hr1G084430.4	AT3G10070.1	17340043
AT1G17440.1	HORVU3Hr1G062710.1	AT4G20280.1	17340043
AT1G17440.1	HORVU7Hr1G006990.9	AT4G34340.1	17340043
AT1G17440.1	HORVU0Hr1G022460.1	AT5G25150.1	17340043
AT1G17440.1	HORVU7Hr1G113760.2	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G151600.1	Wheat	nucleus, plastid	79.95	80.14
TraesCS6A01G161300.1	Wheat	nucleus, plastid	71.6	71.43
TraesCS6B01G190100.1	Wheat	nucleus, plastid	71.12	71.29
Zm00001d042879_P002	Maize	plastid	46.78	41.35
Os01t0846900-01	Rice	nucleus	53.46	41.33
KXG33694	Sorghum	nucleus, plastid	51.55	38.99
HORVU3Hr1G085840.7	Barley	cytosol, mitochondrion, nucleus	52.51	38.53
Zm00001d012396_P003	Maize	nucleus, plastid	48.45	36.84
PGSC0003DMT400012398	Potato	nucleus	14.32	31.58
Solyc06g062900.2.1	Tomato	nucleus	17.42	30.42
KRH06174	Soybean	nucleus, plastid	23.15	27.79
CDX81826	Canola	plastid	27.92	21.75
KRH47589	Soybean	nucleus, plastid	30.55	21.37
CDY26245	Canola	plastid	32.94	21.2
VIT_09s0002g01420.t01	Wine grape	nucleus, plastid	29.59	21.12
CDY48302	Canola	plastid	29.59	20.95
Solyc03g122020.2.1	Tomato	nucleus, plastid	31.98	20.87
GSMUA_Achr7P10670_001	Banana	plastid	31.74	20.68
PGSC0003DMT400006601	Potato	nucleus, plastid	31.26	20.5
Bra025975.1-P	Field mustard	plastid	31.03	20.09
CDY21749	Canola	plastid	26.49	19.82
AT1G17440.1	Thale cress	plastid	31.03	19.03
HORVU3Hr1G084430.4	Barley	plastid	24.58	18.9
Bra030989.1-P	Field mustard	plastid	26.49	18.23

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	EMBL:AK361272	UniProt:F2DBK8	GO:GO:0000124
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046695	GO:GO:0046982	EnsemblPlantsGene:HORVU6Hr1G032840
EnsemblPlants:HORVU6Hr1G032840.2	InterPro:Histone-fold	InterPro:IPR009072	PFAM:PD012998	PFAM:PF03847	PANTHER:PTHR12264
PANTHER:PTHR12264:SF3	SUPFAM:SSF47113	InterPro:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI0002005D12	SEG:seg

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DBK8]

Coordinates

chrchr6H:+:145770320..145772934

Molecular Weight (calculated)

44677.3 Da

IEP (calculated)

9.536

GRAVY (calculated)

-0.448

Length

419 amino acids

Sequence
(BLAST)

001: MADPPSLAPT ASQHHDQLAA FVSIPQNANP QIPLLPTVSS AQVDPASAAT GGRSMDLPPQ LQAPSRTQAA EGAGAFGAIH HSDPASLAPA VGQPPRYATA
101: GMTYGAQMTF PGGGGQLGQQ PALRAAMFGQ GQPRMLQGQG NAASAAQYGI QFQPTMMAQP GQRGVVQGVQ FNTPTAQAQS MGASLMNQMR PNGITTPYGA
201: QTQQRSAYHA QMRPQQLPGS SQNGPVVQML PTHQMQSSMA SPVSPQQRQQ EHMMQLIQQL QQRGLNRHQI AQALQRLPHL NAQHLNQQQQ QQQQASPKMP
301: ASAAWKPANM AGSQPVIPST IRTVAGANAL HRGGGNCSQL LGKRKIHDLV AQVDPLCEVD PEVEDLILEI ADDFISTAAD FACRLAKHRK SSVVEAKDVL
401: LHLQRNCHLS VPGFSQERM

Best Arabidopsis Sequence Match ( AT1G17440.1 )
(BLAST)

001: MAEPIPSSSL SPKSLQSPNP MEPSPASSTP LPSSSSQQQQ LMTAPISNSV NSAASPAMTV TTTEGIVIQN NSQPNISSPN PTSSNPPIGA QIPSPSPLSH
101: PSSSLDQQTQ TQQLVQQTQQ LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQIAQSLQ RSPSLSRLSQ IQQQQQQQHQ GQYGNVLRQQ
201: AGLYGTMNFG GSGSVQQSQQ NQQMVNPNMS RAGLVGQSGH LPMLNGAAGA AQMNIQPQLL AASPRQKSGM VQGSQFHPGS SGQQLQGMQA MGMMGSLNLT
301: SQMRGNPALY AQQRINPGQM RQQLSQQNAL TSPQVQNLQR TSSLAFMNPQ LSGLAQNGQA GMMQNSLSQQ QWLKQMSGIT SPNSFRLQPS QRQALLLQQQ
401: QQQQQQLSSP QLHQSSMSLN QQQISQIIQQ QQQQSQLGQS QMNQSHSQQQ LQQMQQQLQQ QPQQQMQQQQ QQQQQMQINQ QQPSPRMLSH AGQKSVSLTG
501: SQPEATQSGT TTPGGSSSQG TEATNQLLGK RKIQDLVSQV DVHAKLDPDV EDLLLEVADD FIDSVTSFAC SLAKHRKSSV LEPKDILLHL EKNLHLTIPG
601: FSSEDKRQTK TVPTDLHKKR LAMVRALLES SKPETNASNS KETMRQAMVN PNGPNHLLRP SQSSEQLVSQ TSGPHILQHM TRY

Arabidopsis Description

TAF12BTranscription initiation factor TFIID subunit 12b [Source:UniProtKB/Swiss-Prot;Acc:Q940A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.