Factsheet for HORVU0Hr1G022460.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G022460.1
HORVU2Hr1G031760.1
HORVU3Hr1G081440.3
HORVU3Hr1G081540.4
HORVU3Hr1G084430.4
HORVU3Hr1G085840.7
HORVU3Hr1G091670.2
HORVU3Hr1G100530.1
HORVU4Hr1G034590.13
HORVU6Hr1G032840.2
HORVU6Hr1G062340.1
HORVU7Hr1G006990.9
HORVU7Hr1G113760.2
HORVU7Hr1G115120.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25150.1	HORVU3Hr1G085840.7	AT1G17440.1	17340043
AT5G25150.1	HORVU6Hr1G032840.2	AT1G17440.1	17340043
AT5G25150.1	HORVU4Hr1G034590.13	AT1G27720.1	17340043
AT5G25150.1	HORVU6Hr1G062340.1	AT1G27720.1	17340043
AT5G25150.1	HORVU7Hr1G115120.1	AT1G32750.1	17340043
AT5G25150.1	HORVU2Hr1G031760.1	AT1G54140.1	17340043
AT5G25150.1	HORVU3Hr1G081440.3	AT1G54140.1	17340043
AT5G25150.1	HORVU3Hr1G081540.4	AT1G54140.1	17340043
AT5G25150.1	HORVU3Hr1G091670.2	AT1G54140.1	17340043
AT5G25150.1	HORVU3Hr1G100530.1	AT1G54140.1	17340043
AT5G25150.1	HORVU3Hr1G084430.4	AT3G10070.1	17340043
AT5G25150.1	HORVU7Hr1G006990.9	AT4G34340.1	17340043
AT5G25150.1	HORVU0Hr1G022460.1	AT5G25150.1	17340043
AT5G25150.1	HORVU7Hr1G113760.2	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G416400.1	Wheat	nucleus	96.52	96.52
Zm00001d044810_P001	Maize	nucleus	24.13	91.47
GSMUA_Achr9P22400_001	Banana	cytosol	29.24	83.63
Zm00001d053142_P001	Maize	nucleus	26.79	81.37
Zm00001d025112_P001	Maize	cytosol, nucleus, plastid	28.83	77.05
HORVU7Hr1G113760.2	Barley	nucleus	100.0	74.54
TraesCS5A01G317800.1	Wheat	nucleus	98.36	73.32
TraesCS5D01G324200.2	Wheat	nucleus	98.16	73.17
TraesCS7A01G508300.2	Wheat	nucleus	97.95	73.02
TraesCS5B01G318400.1	Wheat	nucleus	97.75	72.87
TraesCS7D01G496500.1	Wheat	nucleus	96.73	72.66
Zm00001d016330_P001	Maize	extracellular	21.06	71.03
KXG20501	Sorghum	nucleus	89.57	66.67
Os06t0649500-01	Rice	nucleus	88.75	66.36
Zm00001d046810_P002	Maize	nucleus	89.57	65.08
KRG99418	Soybean	cytosol, extracellular, plastid	11.45	64.37
VIT_04s0008g05780.t01	Wine grape	nucleus	77.1	55.77
KRH52333	Soybean	nucleus	73.62	54.3
KRH61671	Soybean	nucleus	74.23	54.26
AT5G25150.1	Thale cress	nucleus	73.21	53.51
Bra036534.1-P	Field mustard	nucleus	72.8	53.29
CDY19814	Canola	nucleus	72.8	53.29
CDX87098	Canola	nucleus	72.19	52.84
Solyc06g065700.2.1	Tomato	nucleus	73.01	52.12
KRH05348	Soybean	nucleus	69.94	51.98
KRH15679	Soybean	cytosol	13.5	51.97
CDY05473	Canola	nucleus	69.94	51.35
Bra020485.1-P	Field mustard	nucleus	69.94	51.35
CDY05378	Canola	nucleus	69.33	51.05
GSMUA_Achr7P26980_001	Banana	nucleus	76.48	48.95
GSMUA_Achr9P22410_001	Banana	cytosol	27.61	36.19
HORVU7Hr1G101230.1	Barley	cytosol	15.13	21.89
HORVU4Hr1G033170.1	Barley	cytosol	14.72	21.05
HORVU2Hr1G032990.1	Barley	cytosol	15.95	20.05
HORVU4Hr1G034750.1	Barley	cytosol, nucleus, plastid	19.63	19.05
HORVU2Hr1G053480.9	Barley	mitochondrion	16.77	14.64
HORVU2Hr1G106110.11	Barley	mitochondrion	21.47	11.92
HORVU4Hr1G083410.1	Barley	endoplasmic reticulum	16.97	8.19

Protein Annotations

MapMan:15.3.4.3.1	MapMan:15.3.5.3.5	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:HORVU0Hr1G022460	EnsemblPlants:HORVU0Hr1G022460.1	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:M0XWB5	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19879	PANTHER:PTHR19879:SF1	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000295A991
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chrchrUn:-:114745789..114750693

Molecular Weight (calculated)

53006.6 Da

IEP (calculated)

7.072

GRAVY (calculated)

-0.317

Length

489 amino acids

Sequence
(BLAST)

001: MLGIINERII FEVSAGQPSL ISDDADVVAL VGTSKDLAKQ INQKEVHWGL LEDSVEERME KALSDSDRAE AESKDADAED NNKKKSSEGG KQGGSLNKKL
101: KKDKLVGPTG KNTKSETSMV SAAPRVKPEL TLPATPVEVE QSILEDLRNR AQLNNLALPS VSFYTFLNTH NGLNCSSISN DGSLVVGGFS DSSVKVWDMA
201: KIGQPAKTPS SQGENGSSQG EHLSSTSEGK KPYTLFQGHS GPVYSAAFSP FGDFLLSSSS DSTIRLWSTK LNANLVCYKG HNYPVWDVQF SPVGHYFASA
301: SHDRTARIWS MDKIQPLRIM AGHLADVDCV QWHVNCNYIA TGSSDKTVRL WDVQTGECIR MFIGHRSMVL SLAMSPDGRY MASGDEDGTI MMWDLSTGRC
401: VSPLAGHNSC VWSLAFSCEG ALLASGSADC TVKLWDVASS TKALKMDDTK AGSTNRLRLL KALPTKSTPV YNLRFSRRNL LFASGALSL

Best Arabidopsis Sequence Match ( AT5G25150.1 )
(BLAST)

001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN

Arabidopsis Description

TAF5Transcription initiation factor TFIID subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6S7B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.