Factsheet for TraesCS5A01G317800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G324200.2	Wheat	nucleus	99.54	99.54
TraesCS5B01G318400.1	Wheat	nucleus	99.39	99.39
TraesCS7A01G508300.2	Wheat	nucleus	99.09	99.09
HORVU0Hr1G022460.1	Barley	nucleus	73.32	98.36
HORVU7Hr1G113760.2	Barley	nucleus	98.32	98.32
Zm00001d044810_P001	Maize	nucleus	17.99	91.47
Os06t0649500-01	Rice	nucleus	87.8	88.07
KXG20501	Sorghum	nucleus	87.96	87.82
Zm00001d046810_P002	Maize	nucleus	88.11	85.88
GSMUA_Achr9P22400_001	Banana	cytosol	21.65	83.04
TraesCS7A01G467500.1	Wheat	nucleus	30.03	81.74
Zm00001d053142_P001	Maize	nucleus	19.97	81.37
Zm00001d025112_P001	Maize	cytosol, nucleus, plastid	21.49	77.05
Zm00001d016330_P001	Maize	extracellular	15.7	71.03
KRH52333	Soybean	nucleus	70.43	69.68
KRH61671	Soybean	nucleus	70.43	69.06
Solyc06g065700.2.1	Tomato	nucleus	69.82	66.86
GSMUA_Achr9P22410_001	Banana	cytosol	37.8	66.49
KRH05348	Soybean	nucleus	66.01	65.81
KRG99418	Soybean	cytosol, extracellular, plastid	8.54	64.37
GSMUA_Achr7P26980_001	Banana	nucleus	74.24	63.74
KRH15679	Soybean	cytosol	10.06	51.97
TraesCS4A01G165700.1	Wheat	cytosol, nucleus	12.04	24.53
TraesCS7A01G446500.1	Wheat	cytosol	11.43	21.43
TraesCS7A01G446400.2	Wheat	cytosol	11.28	21.33
TraesCS4A01G149100.1	Wheat	cytosol, nucleus, plastid	16.16	20.83
TraesCS2A01G175200.1	Wheat	plastid	15.7	18.63
TraesCS2A01G227200.3	Wheat	cytosol	15.09	17.71
TraesCS2A01G447700.1	Wheat	mitochondrion	18.9	14.01
TraesCS4A01G370000.1	Wheat	nucleus	15.55	10.85

Protein Annotations

Gene3D:1.25.40.500	MapMan:15.3.4.3.1	MapMan:15.3.5.3.5	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
InterPro:IPR037264	PFAM:PF00400	PFAM:PF04494	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19879	SMART:SM00320	SUPFAM:SSF160897	SUPFAM:SSF50978	InterPro:TFIID_NTD2
InterPro:TFIID_NTD2_sf	EnsemblPlantsGene:TraesCS5A01G317800	EnsemblPlants:TraesCS5A01G317800.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	TIGR:cd08044	SEG:seg	:

Description

No Description!

Coordinates

chr5A:-:528580213..528587567

Molecular Weight (calculated)

73079.5 Da

IEP (calculated)

6.656

GRAVY (calculated)

-0.408

Length

656 amino acids

Sequence
(BLAST)

001: MEDEEMERKV QQYLHRKGFR LTELALQEER NRLSTTSLSD VSLSRPDNDP ARYYDGYNKL RSWAYNSLDQ YKHELLRVLY PAFIHCFMDL VSEGHTLEAR
101: AFFLKFREDH ELMHSRDLQK LEGTLSPLHL EEMDLARSLR ENKFRIKLCE YSYELLLQYL QKTQALVMLG IINERIIFEV SAGQPSLISD DADVVALVGT
201: SKDLAKQINQ KEVHWGLLED SVEERMEKAL SDSDRAEAES KDADAEDNNK KKSSEGGKQG GPLNKKLKKD KLVGATGKNT KSETSMISAA PRVKPELTLP
301: ATPVEVEQSI LEDLRNRAQL NNLALPSVSF YTFLNTHNGL NCSSISNDGS LVVGGFSDSS VKVWDMAKIG QPAKTSSSQG ENGSSQDERL SSTSEGKRPY
401: TLFQGHSGPV YSAAFSPFGD FLLSSSSDST IRLWSTKLNA NLVCYKGHNY PVWDVQFSPV GHYFASASHD RTARIWSMDK IQPLRIMAGH LADVDCVQWH
501: VNCNYIATGS SDKTVRLWDV QTGECIRMFI GHRSMVLSLA MSPDGRYMAS GDEDGTIMMW DLSTGRCVSP LAGHNSCVWS LAFSCEGALL ASGSADCTVK
601: LWDVASSTKA LKMDDTKAGS TNRLRLLKAL PTKSTPVYNL RFSGRNLLFA SGALSL

Best Arabidopsis Sequence Match ( AT5G25150.1 )
(BLAST)

001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN

Arabidopsis Description

TAF5Transcription initiation factor TFIID subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6S7B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.