Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G317800.1 | Wheat | nucleus | 97.98 | 97.98 |
| HORVU4Hr1G083410.1 | Barley | endoplasmic reticulum | 97.55 | 90.52 |
| Os03t0151700-01 | Rice | nucleus | 85.21 | 85.21 |
| EER95491 | Sorghum | nucleus | 84.68 | 84.95 |
| Zm00001d027706_P004 | Maize | nucleus | 84.89 | 83.21 |
| GSMUA_Achr11P... | Banana | cytosol, golgi, plastid | 72.34 | 72.34 |
| KRH67774 | Soybean | nucleus, plastid | 63.72 | 63.52 |
| KRG96051 | Soybean | nucleus | 63.3 | 63.03 |
| VIT_08s0007g04690.t01 | Wine grape | nucleus | 63.3 | 62.5 |
| CDY22910 | Canola | nucleus | 60.64 | 61.22 |
| CDY54973 | Canola | nucleus | 60.64 | 61.22 |
| PGSC0003DMT400066026 | Potato | nucleus | 61.49 | 60.84 |
| Solyc10g039190.1.1 | Tomato | nucleus | 61.38 | 60.74 |
| Bra039543.1-P | Field mustard | nucleus | 60.43 | 60.17 |
| AT3G21540.1 | Thale cress | nucleus | 61.06 | 60.1 |
| PGSC0003DMT400034236 | Potato | cytosol, nucleus, plastid | 59.04 | 59.11 |
| TraesCS7A01G446500.1 | Wheat | cytosol | 7.87 | 21.14 |
| TraesCS7A01G446400.2 | Wheat | cytosol | 7.55 | 20.46 |
| TraesCS4A01G165700.1 | Wheat | cytosol, nucleus | 6.91 | 20.19 |
| TraesCS2A01G447700.1 | Wheat | mitochondrion | 15.74 | 16.72 |
| TraesCS2A01G227200.3 | Wheat | cytosol | 9.68 | 16.28 |
| TraesCS5A01G317800.1 | Wheat | nucleus | 10.85 | 15.55 |
| TraesCS7A01G508300.2 | Wheat | nucleus | 10.74 | 15.4 |
| TraesCS4A01G149100.1 | Wheat | cytosol, nucleus, plastid | 7.98 | 14.73 |
| TraesCS2A01G175200.1 | Wheat | plastid | 8.3 | 14.1 |
| TraesCS7A01G467500.1 | Wheat | nucleus | 2.23 | 8.71 |
Protein Annotations
| MapMan:17.1.3.2.1.3.3 | Gene3D:2.130.10.10 | ncoils:Coil | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PFAM:PF04003 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19853 | PANTHER:PTHR19853:SF0 | InterPro:Quinoprotein_ADH-like_supfam |
| SMART:SM00320 | SUPFAM:SSF50978 | SUPFAM:SSF50998 | InterPro:SSU_processome_Utp12 | EnsemblPlantsGene:TraesCS4A01G370000 | EnsemblPlants:TraesCS4A01G370000.1 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | TIGR:cd00200 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:641591691..641597286
Molecular Weight (calculated)
103312.0 Da
IEP (calculated)
6.742
GRAVY (calculated)
-0.274
Length
940 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKAYLRYEP ALSFGVVASP ESNVVYDPSG RRLLAAALDR FAAWDLKRGL PSATFTPSSS SASLAVSCVA SSPAAASASA SSVASGHADG SIRLWDAETG
101: ACEATLHGHR SAASAIRFAP SGAVLASGSK DCDVILWDVV AQAGLFRLRG HRDQVTDLVF LDSGKKLVTC SKDKFIRVWD LDTQHCLQIV GGHHSEIWSM
201: DVDPSEKFLV SGSADPELRV FRIRQSAEEG EDWNKWDALK LFGEIPRQSK ERIQTIRFNK DGSLVACQVA GKTADIYRIL DETEATRKAK RRLHRKKEKA
301: SAKAAAAEGN GSVIDPLPAQ DSQNPTVVVT DVFKLLQVLR TSKKICSVAF SPSNPPKGCL ATLSLSLNNN VLETYSVDIE KVSKMYSVEI HGHRSDIRSL
401: ALNSEDNLLM STSHNAVKIW NPSTGDCLRT VDSGYGLCSA FVPGNRYGLI GTKTGTLEII DINSGNSIDV IEAHAGSIRS IVLIPDEDGT VNARGFVTGS
501: ADHDVKFWEY QLVQKSDSDA KYLSVTNVRT LKMNDDVLAV SIGPTGKHIA VALLDCTVKV FFLDTLKFCL SLYGHKLPVL CMDISSDGAL IVTGSADKNL
601: KIWGMDFGDC HKSIFAHTDS VMDVKFVPKT HYMFSVGKDR TVKYWDADKF ELLLTLEGHH AEVWCLAISS RGDFIVTGSH DRSIRRWDRT EEQLFIEEER
701: EKRLEETFEA DLDNAVEDRY GQKDDAPDEG SVGVPGKKTK ETVTAADAII DALDTAEEEE KRLNEQKELK NDGEGTKSKP NVIMQGHSPS EYVLNAVSSV
801: RPNDLEQALL SLPFSDALKL MAYLKEWSLI PLKVELVCRV CLVLLQTHHN QLTTTPAARS ILTALKDILY GRVKDCKDTI GFNLAAMDHI KELLTMRSDA
901: PFRDAKAKLL EIRQEQSKRS DRSDGGEKRK KKKPKASVQS
101: ACEATLHGHR SAASAIRFAP SGAVLASGSK DCDVILWDVV AQAGLFRLRG HRDQVTDLVF LDSGKKLVTC SKDKFIRVWD LDTQHCLQIV GGHHSEIWSM
201: DVDPSEKFLV SGSADPELRV FRIRQSAEEG EDWNKWDALK LFGEIPRQSK ERIQTIRFNK DGSLVACQVA GKTADIYRIL DETEATRKAK RRLHRKKEKA
301: SAKAAAAEGN GSVIDPLPAQ DSQNPTVVVT DVFKLLQVLR TSKKICSVAF SPSNPPKGCL ATLSLSLNNN VLETYSVDIE KVSKMYSVEI HGHRSDIRSL
401: ALNSEDNLLM STSHNAVKIW NPSTGDCLRT VDSGYGLCSA FVPGNRYGLI GTKTGTLEII DINSGNSIDV IEAHAGSIRS IVLIPDEDGT VNARGFVTGS
501: ADHDVKFWEY QLVQKSDSDA KYLSVTNVRT LKMNDDVLAV SIGPTGKHIA VALLDCTVKV FFLDTLKFCL SLYGHKLPVL CMDISSDGAL IVTGSADKNL
601: KIWGMDFGDC HKSIFAHTDS VMDVKFVPKT HYMFSVGKDR TVKYWDADKF ELLLTLEGHH AEVWCLAISS RGDFIVTGSH DRSIRRWDRT EEQLFIEEER
701: EKRLEETFEA DLDNAVEDRY GQKDDAPDEG SVGVPGKKTK ETVTAADAII DALDTAEEEE KRLNEQKELK NDGEGTKSKP NVIMQGHSPS EYVLNAVSSV
801: RPNDLEQALL SLPFSDALKL MAYLKEWSLI PLKVELVCRV CLVLLQTHHN QLTTTPAARS ILTALKDILY GRVKDCKDTI GFNLAAMDHI KELLTMRSDA
901: PFRDAKAKLL EIRQEQSKRS DRSDGGEKRK KKKPKASVQS
001: MVKAYQRYDA ATSFGVISSV DSNIAYDSTG KYVLAPALEK VGIWHVRQGV CSKTLTPSSS RGGPSLAVTS IASSASSLVA VGYADGSIRI WDTEKGTCEV
101: NFNSHKGAVT ALRYNKVGSM LASGSKDNDI ILWDVVGESG LFRLRGHRDQ VTDLVFLDGG KKLVSSSKDK FLRVWDLETQ HCMQIVSGHH SEVWSVDTDP
201: EERYVVTGSA DQELRFYAVK EYSSNGSLVS DSNANEIKAS EEHSTENKWE ILKLFGEIQR QTKDRVARVR FNVSGKLLAC QMAGKTIEIF RVLDEAEAKQ
301: KAKRRLRRKE KKSSKVGDEN STANGEASAK IELADAVSSP TVLDVFKLLQ VIRAGRKISS FSFCPTAPKE SLGTLALSLN NNSLEFYSLK SSENAKTVTI
401: EHQGHRSDVR SVTLSEDNTL LMSTSHSEVK IWNPSTGSCL RTIDSGYGLC SLIVPQNKYG IVGTKSGVLE IIDIGSATKV EEVKAHGGTI WSITPIPNDS
501: GFVTVSADHE VKFWEYQVKQ KSGKATKKLT VSNVKSMKMN DDVLAVAISP DAKHIAVALL DSTVKVFYMD SLKFYLSLYG HKLPVMCIDI SSDGELIVTG
601: SQDKNLKIWG LDFGDCHKSI FAHGDSVMGV KFVRNTHYLF SIGKDRLVKY WDADKFEHLL TLEGHHAEIW CLAISNRGDF LVTGSHDRSM RRWDRSEEPF
701: FLEEEKEKRL EELFESEIDN AADDRHGPME EIPEEGVAAL AGKKTIDVLS AADSIIDALE VAEDETKRHA AYEEEKTKGK VPEYLPNAVM FGLSPSEYVL
801: RAISNVRTND LEQTLLALPF SDSLKFLCYM KDWSLIPEKV ELVSRIATII LQTHHNQLVT TPSARPILSV LRDILYSEIK ACKDTIGFNL AAMDHVKQMM
901: DARSDAPFKD AKAKLLEIRS QQAKRMASRG DTKMEKKRKK KQKKLEEGQH GHALF
101: NFNSHKGAVT ALRYNKVGSM LASGSKDNDI ILWDVVGESG LFRLRGHRDQ VTDLVFLDGG KKLVSSSKDK FLRVWDLETQ HCMQIVSGHH SEVWSVDTDP
201: EERYVVTGSA DQELRFYAVK EYSSNGSLVS DSNANEIKAS EEHSTENKWE ILKLFGEIQR QTKDRVARVR FNVSGKLLAC QMAGKTIEIF RVLDEAEAKQ
301: KAKRRLRRKE KKSSKVGDEN STANGEASAK IELADAVSSP TVLDVFKLLQ VIRAGRKISS FSFCPTAPKE SLGTLALSLN NNSLEFYSLK SSENAKTVTI
401: EHQGHRSDVR SVTLSEDNTL LMSTSHSEVK IWNPSTGSCL RTIDSGYGLC SLIVPQNKYG IVGTKSGVLE IIDIGSATKV EEVKAHGGTI WSITPIPNDS
501: GFVTVSADHE VKFWEYQVKQ KSGKATKKLT VSNVKSMKMN DDVLAVAISP DAKHIAVALL DSTVKVFYMD SLKFYLSLYG HKLPVMCIDI SSDGELIVTG
601: SQDKNLKIWG LDFGDCHKSI FAHGDSVMGV KFVRNTHYLF SIGKDRLVKY WDADKFEHLL TLEGHHAEIW CLAISNRGDF LVTGSHDRSM RRWDRSEEPF
701: FLEEEKEKRL EELFESEIDN AADDRHGPME EIPEEGVAAL AGKKTIDVLS AADSIIDALE VAEDETKRHA AYEEEKTKGK VPEYLPNAVM FGLSPSEYVL
801: RAISNVRTND LEQTLLALPF SDSLKFLCYM KDWSLIPEKV ELVSRIATII LQTHHNQLVT TPSARPILSV LRDILYSEIK ACKDTIGFNL AAMDHVKQMM
901: DARSDAPFKD AKAKLLEIRS QQAKRMASRG DTKMEKKRKK KQKKLEEGQH GHALF
Arabidopsis Description
Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LVF2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.