Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G317800.1 | Wheat | nucleus | 90.72 | 97.77 |
| TraesCS4A01G370000.1 | Wheat | nucleus | 90.52 | 97.55 |
| Os03t0151700-01 | Rice | nucleus | 79.17 | 85.32 |
| EER95491 | Sorghum | nucleus | 78.48 | 84.85 |
| Zm00001d027706_P004 | Maize | nucleus | 78.48 | 82.9 |
| GSMUA_Achr11P... | Banana | cytosol, golgi, plastid | 67.32 | 72.55 |
| KRH67774 | Soybean | nucleus, plastid | 59.03 | 63.41 |
| KRG96051 | Soybean | nucleus | 58.74 | 63.03 |
| VIT_08s0007g04690.t01 | Wine grape | nucleus | 58.64 | 62.4 |
| PGSC0003DMT400066026 | Potato | nucleus | 57.06 | 60.84 |
| CDY54973 | Canola | nucleus | 55.87 | 60.79 |
| Solyc10g039190.1.1 | Tomato | nucleus | 56.96 | 60.74 |
| CDY22910 | Canola | nucleus | 55.77 | 60.69 |
| Bra039543.1-P | Field mustard | nucleus | 55.77 | 59.85 |
| AT3G21540.1 | Thale cress | nucleus | 56.17 | 59.58 |
| PGSC0003DMT400034236 | Potato | cytosol, nucleus, plastid | 55.18 | 59.53 |
| HORVU7Hr1G101230.1 | Barley | cytosol | 7.11 | 21.3 |
| HORVU4Hr1G033170.1 | Barley | cytosol | 6.22 | 18.42 |
| HORVU0Hr1G022460.1 | Barley | nucleus | 8.19 | 16.97 |
| HORVU2Hr1G106110.11 | Barley | mitochondrion | 14.31 | 16.46 |
| HORVU7Hr1G113760.2 | Barley | nucleus | 10.46 | 16.16 |
| HORVU4Hr1G034750.1 | Barley | cytosol, nucleus, plastid | 7.8 | 15.67 |
| HORVU2Hr1G053480.9 | Barley | mitochondrion | 8.59 | 15.54 |
| HORVU2Hr1G032990.1 | Barley | cytosol | 5.23 | 13.62 |
Protein Annotations
| MapMan:17.1.3.2.1.3.3 | Gene3D:2.130.10.10 | UniProt:A0A287PWN8 | ncoils:Coil | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | EnsemblPlantsGene:HORVU4Hr1G083410 | EnsemblPlants:HORVU4Hr1G083410.1 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| PFAM:PF00400 | PFAM:PF04003 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR19853 | PANTHER:PTHR19853:SF0 | SMART:SM00320 | SUPFAM:SSF50978 | InterPro:SSU_processome_Utp12 | UniParc:UPI000B476745 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
No Description!
Coordinates
chrchr4H:+:625310642..625317299
Molecular Weight (calculated)
112052.0 Da
IEP (calculated)
7.277
GRAVY (calculated)
-0.313
Length
1013 amino acids
Sequence
(BLAST)
(BLAST)
0001: MFFKEFLCRF IISKVIFIIW MHTRQTCEHQ INEKFEGRDP LKTPGVLPSS YSPSLNPNPH NYSPLPRRRR PGAMVKAYLR YEPALSFGVV ASPESNVVYD
0101: PSGRRLLAAA LDRFAAWDLK RGLPSATFTP SSSSASLAVS CVASSPAAAS ASASSIASGH ADGSIRLWDA ETGACEATLH GHRSAASALR FAPSGAVLAS
0201: GSKDCDVILW DVVAQAGLFR LRGHRDQVTD LLFLDSGKKL VTCSKDKFIR VWDLDTQHCL QIVGGHHSEI WSMDVDPSEK FLVSGSADPE LRVFRIRQSV
0301: EEGEDWNKWD ALKLFGEIPR QSKERIQTIR FNKDGSLVAC QVAGKTADIY RILDETEATR KAKRRLHRKK EKAAAKAAAA EGNGTVIDPL PAQDSQNPTV
0401: VVTDVFKLLQ VLRTSKKICS VAFSPNNPPK GCLATLSLSL NNNVLETYSV DNEKVSKMYS VEIHGHRSDI RSLALNSEDN LLMSTSHNAV KIWNPSTGDC
0501: LRTVDSGYGL CSAFVPGNRY GLIGTKTGTL EIIDINSGNS IDVIEAHAGS IRSIVLIPDE DGTVNARGFV TGSADHDVKF WEYQLVQKSD SDTKHLSVTN
0601: VRTLKMNDDV LAVSIGPTGK HIAVALLDCT VKVFFLDTLK FCLSLYGHKL PVLCMDISSD GGLIVTGSAD KNLKIWGMDF GDCHKSIFAH GDSVMDVKFV
0701: PKTHYMFSVG KDRTVKYWDA DKFELLLTLE GHHAEVWCLA ISSRGDFIVT GSHDRSIRRW DRTEEQLFIE EEREKRLEET FEADLDNAVE DRYGQKDDAP
0801: DEGSVGVPGK KTKETVTATD AIIDALDTAE EEEKRLNEQK ELQNNGEGSK SKPNVIMQGH SPSEYVLNAV SSVRPNDLEQ VLLSLPFSDA LKLMAYLKEW
0901: SVIPLKVELV CRVCLVLLQT HHNQLTTTPA ARSILTELKD ILYGRVKDCK DTIGFNLAAM DHIKELLTMR SDAPFRDAKA KLMEIRQEQS KRSDRSGGGE
1001: RRKKKKPKPS VQS
0101: PSGRRLLAAA LDRFAAWDLK RGLPSATFTP SSSSASLAVS CVASSPAAAS ASASSIASGH ADGSIRLWDA ETGACEATLH GHRSAASALR FAPSGAVLAS
0201: GSKDCDVILW DVVAQAGLFR LRGHRDQVTD LLFLDSGKKL VTCSKDKFIR VWDLDTQHCL QIVGGHHSEI WSMDVDPSEK FLVSGSADPE LRVFRIRQSV
0301: EEGEDWNKWD ALKLFGEIPR QSKERIQTIR FNKDGSLVAC QVAGKTADIY RILDETEATR KAKRRLHRKK EKAAAKAAAA EGNGTVIDPL PAQDSQNPTV
0401: VVTDVFKLLQ VLRTSKKICS VAFSPNNPPK GCLATLSLSL NNNVLETYSV DNEKVSKMYS VEIHGHRSDI RSLALNSEDN LLMSTSHNAV KIWNPSTGDC
0501: LRTVDSGYGL CSAFVPGNRY GLIGTKTGTL EIIDINSGNS IDVIEAHAGS IRSIVLIPDE DGTVNARGFV TGSADHDVKF WEYQLVQKSD SDTKHLSVTN
0601: VRTLKMNDDV LAVSIGPTGK HIAVALLDCT VKVFFLDTLK FCLSLYGHKL PVLCMDISSD GGLIVTGSAD KNLKIWGMDF GDCHKSIFAH GDSVMDVKFV
0701: PKTHYMFSVG KDRTVKYWDA DKFELLLTLE GHHAEVWCLA ISSRGDFIVT GSHDRSIRRW DRTEEQLFIE EEREKRLEET FEADLDNAVE DRYGQKDDAP
0801: DEGSVGVPGK KTKETVTATD AIIDALDTAE EEEKRLNEQK ELQNNGEGSK SKPNVIMQGH SPSEYVLNAV SSVRPNDLEQ VLLSLPFSDA LKLMAYLKEW
0901: SVIPLKVELV CRVCLVLLQT HHNQLTTTPA ARSILTELKD ILYGRVKDCK DTIGFNLAAM DHIKELLTMR SDAPFRDAKA KLMEIRQEQS KRSDRSGGGE
1001: RRKKKKPKPS VQS
001: MVKAYQRYDA ATSFGVISSV DSNIAYDSTG KYVLAPALEK VGIWHVRQGV CSKTLTPSSS RGGPSLAVTS IASSASSLVA VGYADGSIRI WDTEKGTCEV
101: NFNSHKGAVT ALRYNKVGSM LASGSKDNDI ILWDVVGESG LFRLRGHRDQ VTDLVFLDGG KKLVSSSKDK FLRVWDLETQ HCMQIVSGHH SEVWSVDTDP
201: EERYVVTGSA DQELRFYAVK EYSSNGSLVS DSNANEIKAS EEHSTENKWE ILKLFGEIQR QTKDRVARVR FNVSGKLLAC QMAGKTIEIF RVLDEAEAKQ
301: KAKRRLRRKE KKSSKVGDEN STANGEASAK IELADAVSSP TVLDVFKLLQ VIRAGRKISS FSFCPTAPKE SLGTLALSLN NNSLEFYSLK SSENAKTVTI
401: EHQGHRSDVR SVTLSEDNTL LMSTSHSEVK IWNPSTGSCL RTIDSGYGLC SLIVPQNKYG IVGTKSGVLE IIDIGSATKV EEVKAHGGTI WSITPIPNDS
501: GFVTVSADHE VKFWEYQVKQ KSGKATKKLT VSNVKSMKMN DDVLAVAISP DAKHIAVALL DSTVKVFYMD SLKFYLSLYG HKLPVMCIDI SSDGELIVTG
601: SQDKNLKIWG LDFGDCHKSI FAHGDSVMGV KFVRNTHYLF SIGKDRLVKY WDADKFEHLL TLEGHHAEIW CLAISNRGDF LVTGSHDRSM RRWDRSEEPF
701: FLEEEKEKRL EELFESEIDN AADDRHGPME EIPEEGVAAL AGKKTIDVLS AADSIIDALE VAEDETKRHA AYEEEKTKGK VPEYLPNAVM FGLSPSEYVL
801: RAISNVRTND LEQTLLALPF SDSLKFLCYM KDWSLIPEKV ELVSRIATII LQTHHNQLVT TPSARPILSV LRDILYSEIK ACKDTIGFNL AAMDHVKQMM
901: DARSDAPFKD AKAKLLEIRS QQAKRMASRG DTKMEKKRKK KQKKLEEGQH GHALF
101: NFNSHKGAVT ALRYNKVGSM LASGSKDNDI ILWDVVGESG LFRLRGHRDQ VTDLVFLDGG KKLVSSSKDK FLRVWDLETQ HCMQIVSGHH SEVWSVDTDP
201: EERYVVTGSA DQELRFYAVK EYSSNGSLVS DSNANEIKAS EEHSTENKWE ILKLFGEIQR QTKDRVARVR FNVSGKLLAC QMAGKTIEIF RVLDEAEAKQ
301: KAKRRLRRKE KKSSKVGDEN STANGEASAK IELADAVSSP TVLDVFKLLQ VIRAGRKISS FSFCPTAPKE SLGTLALSLN NNSLEFYSLK SSENAKTVTI
401: EHQGHRSDVR SVTLSEDNTL LMSTSHSEVK IWNPSTGSCL RTIDSGYGLC SLIVPQNKYG IVGTKSGVLE IIDIGSATKV EEVKAHGGTI WSITPIPNDS
501: GFVTVSADHE VKFWEYQVKQ KSGKATKKLT VSNVKSMKMN DDVLAVAISP DAKHIAVALL DSTVKVFYMD SLKFYLSLYG HKLPVMCIDI SSDGELIVTG
601: SQDKNLKIWG LDFGDCHKSI FAHGDSVMGV KFVRNTHYLF SIGKDRLVKY WDADKFEHLL TLEGHHAEIW CLAISNRGDF LVTGSHDRSM RRWDRSEEPF
701: FLEEEKEKRL EELFESEIDN AADDRHGPME EIPEEGVAAL AGKKTIDVLS AADSIIDALE VAEDETKRHA AYEEEKTKGK VPEYLPNAVM FGLSPSEYVL
801: RAISNVRTND LEQTLLALPF SDSLKFLCYM KDWSLIPEKV ELVSRIATII LQTHHNQLVT TPSARPILSV LRDILYSEIK ACKDTIGFNL AAMDHVKQMM
901: DARSDAPFKD AKAKLLEIRS QQAKRMASRG DTKMEKKRKK KQKKLEEGQH GHALF
Arabidopsis Description
Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LVF2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.