Factsheet for HORVU2Hr1G106110.11

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G447700.1	Wheat	mitochondrion	96.94	96.5
TraesCS7D01G500800.1	Wheat	mitochondrion	96.59	96.49
TraesCS7B01G423400.1	Wheat	nucleus	96.14	96.25
TraesCS2D01G446600.2	Wheat	mitochondrion	96.82	96.17
TraesCS2B01G468100.1	Wheat	nucleus	96.37	95.72
Os04t0592700-01	Rice	nucleus	85.02	84.06
EES12762	Sorghum	cytosol	83.88	83.31
Zm00001d002483_P002	Maize	mitochondrion	82.18	79.56
Zm00001d026195_P002	Maize	cytosol	82.41	78.66
PGSC0003DMT400009959	Potato	cytosol	10.56	67.39
KRG88454	Soybean	cytosol, mitochondrion, peroxisome, plastid	33.6	66.07
GSMUA_Achr11P...	Banana	mitochondrion	67.54	64.6
VIT_16s0039g01690.t01	Wine grape	cytosol	64.93	63.56
KRH03286	Soybean	nucleus	61.63	61.77
AT5G16750.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	60.95	61.3
CDX85488	Canola	cytosol, mitochondrion, nucleus, plastid	60.16	60.85
CDY38089	Canola	cytosol, mitochondrion, nucleus, plastid	59.93	60.83
Bra023582.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	59.93	60.83
Bra008598.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	59.7	60.6
CDX69423	Canola	cytosol, mitochondrion, nucleus, plastid	59.7	60.6
CDY16982	Canola	cytosol, mitochondrion, nucleus, plastid	59.93	60.21
Solyc03g097160.2.1	Tomato	nucleus	59.48	60.16
KRH57076	Soybean	plasma membrane	57.66	60.05
PGSC0003DMT400034226	Potato	cytosol	17.03	59.76
HORVU0Hr1G022460.1	Barley	nucleus	11.92	21.47
HORVU4Hr1G033170.1	Barley	cytosol	7.72	19.88
HORVU7Hr1G113760.2	Barley	nucleus	14.07	18.9
HORVU7Hr1G101230.1	Barley	cytosol	7.15	18.64
HORVU4Hr1G034750.1	Barley	cytosol, nucleus, plastid	9.88	17.26
HORVU2Hr1G032990.1	Barley	cytosol	7.49	16.97
HORVU2Hr1G053480.9	Barley	mitochondrion	9.65	15.18
HORVU4Hr1G083410.1	Barley	endoplasmic reticulum	16.46	14.31
CDY12834	Canola	endoplasmic reticulum, extracellular	1.14	5.38

Protein Annotations

MapMan:17.1.3.2.1.3.4	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006139	GO:GO:0006364	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009880	GO:GO:0009987	GO:GO:0032040
GO:GO:0051301	EnsemblPlantsGene:HORVU2Hr1G106110	EnsemblPlants:HORVU2Hr1G106110.11	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	PFAM:PF08625	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19854	PANTHER:PTHR19854:SF15	SMART:SM00320	SUPFAM:SSF50978	InterPro:SSU_processome_Utp13	UniParc:UPI0002957C1A
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chrchr2H:-:708637061..708689735

Molecular Weight (calculated)

96475.0 Da

IEP (calculated)

6.416

GRAVY (calculated)

-0.170

Length

881 amino acids

Sequence
(BLAST)

001: MALSQGPKKN YRCDRSLQQF YTGGPFAVGS APRGEGEGDA EAFLACACGS ELRVVSAADA SSIGEPIDGD SEAVTGIALS PDSRLLFAAG HSKLIRVWDL
101: ASRTCIRSWK GHDGPVMAMS CHASGGLLAT AGADKKVCVW DVDGGFCTHF FRGHTAVVTT IMFHKDPKRL LLFSGSDDGT VRVWNLESKK CIAVLNAHFS
201: TVTSLALSED GLTLLSAGRD KVVNVWDLRK YASKKTIPAY EMIEGVSFIG PGSGILACLG VEVAKLKEKT DGYFLTVGER GLVRMWCLES AVCVFEQQLS
301: DVTINSENEE SRRGFTATIM LPDDQGILCV TADQQFLFYS CTRTDEGTFQ LNLYKRLIGY NDEILDLKFV GEEEKYLAVA TNLEQVRVYD VASMSCSYVL
401: AGHTEIVVCL DTCVSASGKT LVVTGSKDNT VRLWDMEKRS CIGTGKGHLG AIGCVAFSKK SKNFFVSGSS DRTIKVWTWD DTLIDAGGEV PLKAKAGVAA
501: HDKDINSLSV SPNDGFVCSG SEDRTASIWK LPNLVSSVVL KGHKRGIWSV EFSPVEQCVI TSSGDKTVKI WHVADGSCLK TFEGHTSSVL RASFLSRGTQ
601: FVSCGSDGLV KLWTIKTNEC IATYDKHDGK VWALAVGKKT EMLATGGTDS DLNLWYDCTL EDKQEDFLKK EEEVLRGQEL ENAVSDSDYT RAIQLAFELR
701: RPRRLLELFS QLCRKADPED PIEKALVGLP KEGLRVLLEY IREWNTKPKF CHVAQFVLFR VLRSLPPTDI LEIKGISELL EGLIPYSQRH FSRVDRLVRS
801: TFLLDYTLTR MSVVDPDVDV GITKDVTNDS STDNVEIAPA EPEQETPEKP GKKRKSSKTT PSSKKSSKKV KASSNAVSVE A

Best Arabidopsis Sequence Match ( AT5G16750.1 )
(BLAST)

001: MAPHSLKKNY RCSRSLKQFY GGGPFIVSSD GSFIACACGD VINIVDSTDS SVKSTIEGES DTLTALALSP DDKLLFSAGH SRQIRVWDLE TLKCIRSWKG
101: HEGPVMGMAC HASGGLLATA GADRKVLVWD VDGGFCTHYF RGHKGVVSSI LFHPDSNKNI LISGSDDATV RVWDLNAKNT EKKCLAIMEK HFSAVTSIAL
201: SEDGLTLFSA GRDKVVNLWD LHDYSCKATV ATYEVLEAVT TVSSGTPFAS FVASLDQKKS KKKESDSQAT YFITVGERGV VRIWKSEGSI CLYEQKSSDI
301: TVSSDDEESK RGFTAAAMLP SDHGLLCVTA DQQFFFYSVV ENVEETELVL SKRLVGYNEE IADMKFLGDE EQFLAVATNL EEVRVYDVAT MSCSYVLAGH
401: KEVVLSLDTC VSSSGNVLIV TGSKDKTVRL WNATSKSCIG VGTGHNGDIL AVAFAKKSFS FFVSGSGDRT LKVWSLDGIS EDSEEPINLK TRSVVAAHDK
501: DINSVAVARN DSLVCTGSED RTASIWRLPD LVHVVTLKGH KRRIFSVEFS TVDQCVMTAS GDKTVKIWAI SDGSCLKTFE GHTSSVLRAS FITDGTQFVS
601: CGADGLLKLW NVNTSECIAT YDQHEDKVWA LAVGKKTEMI ATGGGDAVIN LWHDSTASDK EDDFRKEEEA ILRGQELENA VLDAEYTKAI RLAFELCRPH
701: KVFELFSGLC RKRDSDEQIV KALQGLEKEE FRLLFEYVRE WNTKPKLCHI AQFVLYKTFN ILPPTEIVQV KGIGELLEGL IPYSQRHFSR IDRFVRSSFL
801: LDYTLGEMSV IDPETVETEY PKDEKKKEKD VIAAMEQDTD ELKQETPSRK RKSQKSKGKS NKKRLIAEAQ GSVIAV

Arabidopsis Description

TOZTransducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFE2]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.