CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026195_P002	Maize	cytosol	95.72	91.98
Zm00001d002483_P002	Maize	mitochondrion	93.69	91.32
Os04t0592700-01	Rice	nucleus	85.23	84.85
TraesCS2D01G446600.2	Wheat	mitochondrion	84.33	84.33
TraesCS2B01G468100.1	Wheat	nucleus	84.22	84.22
TraesCS7B01G423400.1	Wheat	nucleus	83.31	83.98
TraesCS2A01G447700.1	Wheat	mitochondrion	83.77	83.95
HORVU2Hr1G106110.11	Barley	mitochondrion	83.31	83.88
TraesCS7D01G500800.1	Wheat	mitochondrion	83.31	83.79
PGSC0003DMT400009959	Potato	cytosol	11.16	71.74
GSMUA_Achr11P...	Banana	mitochondrion	68.09	65.58
KRG88454	Soybean	cytosol, mitochondrion, peroxisome, plastid	32.92	65.18
VIT_16s0039g01690.t01	Wine grape	cytosol	64.49	63.56
KRH03286	Soybean	nucleus	61.22	61.77
PGSC0003DMT400034226	Potato	cytosol	17.36	61.35
AT5G16750.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	60.09	60.84
Solyc03g097160.2.1	Tomato	nucleus	58.85	59.93
CDY38089	Canola	cytosol, mitochondrion, nucleus, plastid	58.51	59.79
CDX85488	Canola	cytosol, mitochondrion, nucleus, plastid	58.4	59.47
KRH57076	Soybean	plasma membrane	56.71	59.46
Bra008598.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	58.17	59.45
Bra023582.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	58.17	59.45
CDX69423	Canola	cytosol, mitochondrion, nucleus, plastid	58.06	59.33
CDY16982	Canola	cytosol, mitochondrion, nucleus, plastid	58.4	59.06
EES08930	Sorghum	cytosol	8.12	22.36
EER98280	Sorghum	cytosol, nucleus, plastid	8.57	22.03
KXG20501	Sorghum	nucleus	15.33	20.7
KXG23186	Sorghum	plastid	5.41	19.67
EER94850	Sorghum	plastid	9.02	15.38
EER95491	Sorghum	nucleus	15.9	15.05
EES11818	Sorghum	nucleus, plastid	9.36	13.79
OQU81634	Sorghum	cytosol, mitochondrion, nucleus, plastid	2.48	12.22
OQU91217	Sorghum	plastid	3.27	11.79
OQU84751	Sorghum	plastid	2.48	10.84
OQU76815	Sorghum	plastid	2.37	9.95
OQU89577	Sorghum	plastid	2.37	9.86
CDY12834	Canola	endoplasmic reticulum, extracellular	0.9	4.3

Protein Annotations

MapMan:17.1.3.2.1.3.4	Gene3D:2.130.10.10	EntrezGene:8071089	UniProt:C5YF13	ncoils:Coil	EnsemblPlants:EES12762
ProteinID:EES12762	ProteinID:EES12762.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0000462	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006364	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009880
GO:GO:0009987	GO:GO:0030515	GO:GO:0032040	GO:GO:0034388	GO:GO:0051301	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF08625	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19854	PANTHER:PTHR19854:SF15	SMART:SM00320	EnsemblPlantsGene:SORBI_3006G198600
SUPFAM:SSF50978	InterPro:SSU_processome_Utp13	UniParc:UPI0001A87404	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002448434.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:-:55090190..55096479

Molecular Weight (calculated)

96927.5 Da

IEP (calculated)

6.469

GRAVY (calculated)

-0.157

Length

887 amino acids

Sequence
(BLAST)

001: MASTHALKKN YRCDRSLQQF YTGGPFAVGL APGGDGEGEG GAQAEAFLAC ACGGEVRVVS AADASAIGEP VDGDSEAITA LALSPDSRLI FAAGHSRLIR
101: VWDLASRTCI RSWKGHDGPI MAMACHASGG LLATAGADKK VCVWDVDGGF CTHFLRGHTG VVTTIMFHKD PKRLLLFSGS EDGTVRVWNL ETKKCVAVLK
201: EHFSAVTSLT LSDDGQTLLS AGRDKIVTAW DIRKYSSKKT IPTYEMIEAV SFIGSGSELL ACLGIELANI KEKAASYFLT VGERGVVRIW CLESSLCVFE
301: QQTSDVTVNS ENEETRRGFT SAVMLPNDQG LLCVTADQQF LFYCPKRTDD GTFELSLYRR LIGYNDEILD LKFVGEEEQY LAVATNLEQV RVYDVASMSC
401: SYVLAGHTEI VVCIDTCVSA SGKTLVVTGS KDNTVRLWDV ERKSCIGIGK GHLGAVGSVA FSKKTKNFFV SGSSDRTIKV WTWDDALGDA EDEVSLKAKA
501: VVAAHDKDIN SLAISPNDGL VCSGSEDRTA CIWKLPNLVS SIVLKGHKRG IWSVEFSPIE QCVMTSSGDR TIKIWSVADG SCLKTFEGHT SSVLRASFLS
601: RGTQIVSCGS DGLVKLWTIK TNECIATYDK HDGKVWALAV GMKTEMVATG GTDSVLNLWH DCTKEDKQED FRKKEEEVLR GQELENAVSD SDYAKAIQLA
701: FELRRPHRLL DLFSQLARRA DAEDPIEKAL LGLPKDGLRV LLEYVREWNT KPKFCHVAQF VLFRVLRSFS PTDILEIKGI SELLEGLIPY SQRHFSRVDR
801: LVRSTFLLDY TLMRMSVVDS DVDAGTIKDE MNGSSVENGE LAEPRPASPV PEKSSKKRKS SKSSKKGKEK KVKVASSGHS NDVSVEA

Best Arabidopsis Sequence Match ( AT5G16750.1 )
(BLAST)

001: MAPHSLKKNY RCSRSLKQFY GGGPFIVSSD GSFIACACGD VINIVDSTDS SVKSTIEGES DTLTALALSP DDKLLFSAGH SRQIRVWDLE TLKCIRSWKG
101: HEGPVMGMAC HASGGLLATA GADRKVLVWD VDGGFCTHYF RGHKGVVSSI LFHPDSNKNI LISGSDDATV RVWDLNAKNT EKKCLAIMEK HFSAVTSIAL
201: SEDGLTLFSA GRDKVVNLWD LHDYSCKATV ATYEVLEAVT TVSSGTPFAS FVASLDQKKS KKKESDSQAT YFITVGERGV VRIWKSEGSI CLYEQKSSDI
301: TVSSDDEESK RGFTAAAMLP SDHGLLCVTA DQQFFFYSVV ENVEETELVL SKRLVGYNEE IADMKFLGDE EQFLAVATNL EEVRVYDVAT MSCSYVLAGH
401: KEVVLSLDTC VSSSGNVLIV TGSKDKTVRL WNATSKSCIG VGTGHNGDIL AVAFAKKSFS FFVSGSGDRT LKVWSLDGIS EDSEEPINLK TRSVVAAHDK
501: DINSVAVARN DSLVCTGSED RTASIWRLPD LVHVVTLKGH KRRIFSVEFS TVDQCVMTAS GDKTVKIWAI SDGSCLKTFE GHTSSVLRAS FITDGTQFVS
601: CGADGLLKLW NVNTSECIAT YDQHEDKVWA LAVGKKTEMI ATGGGDAVIN LWHDSTASDK EDDFRKEEEA ILRGQELENA VLDAEYTKAI RLAFELCRPH
701: KVFELFSGLC RKRDSDEQIV KALQGLEKEE FRLLFEYVRE WNTKPKLCHI AQFVLYKTFN ILPPTEIVQV KGIGELLEGL IPYSQRHFSR IDRFVRSSFL
801: LDYTLGEMSV IDPETVETEY PKDEKKKEKD VIAAMEQDTD ELKQETPSRK RKSQKSKGKS NKKRLIAEAQ GSVIAV

Arabidopsis Description

TOZTransducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFE2]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.