Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KXG37554 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26060.1 | KXG37554 | AT4G16440.1 | 23104832 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019299_P001 | Maize | cytosol | 93.04 | 91.98 |
| Os07t0252000-01 | Rice | cytosol | 86.96 | 84.99 |
| HORVU7Hr1G101230.1 | Barley | cytosol | 82.32 | 84.02 |
| TraesCS7D01G435400.1 | Wheat | cytosol | 83.77 | 82.57 |
| TraesCS7B01G346200.1 | Wheat | cytosol, nucleus, plastid | 83.48 | 82.29 |
| TraesCS7A01G446500.1 | Wheat | cytosol | 83.48 | 82.29 |
| TraesCS7A01G446400.2 | Wheat | cytosol | 79.13 | 78.67 |
| TraesCS7B01G346100.1 | Wheat | cytosol | 78.84 | 77.71 |
| TraesCS7D01G435500.1 | Wheat | cytosol | 78.55 | 77.65 |
| GSMUA_Achr5P26190_001 | Banana | cytosol | 68.99 | 68.39 |
| VIT_08s0007g03360.t01 | Wine grape | cytosol | 67.25 | 67.44 |
| CDY11502 | Canola | cytosol | 66.09 | 65.9 |
| CDX76728 | Canola | cytosol | 65.8 | 65.61 |
| Bra007771.1-P | Field mustard | cytosol | 65.8 | 65.61 |
| KRH67917 | Soybean | cytosol | 63.77 | 64.14 |
| Solyc09g074400.2.1 | Tomato | cytosol | 64.93 | 63.82 |
| PGSC0003DMT400043378 | Potato | cytosol | 49.57 | 62.87 |
| AT2G26060.1 | Thale cress | cytosol | 63.77 | 62.5 |
| AT4G32990.1 | Thale cress | cytosol | 52.75 | 55.49 |
| KRH33352 | Soybean | plastid | 34.2 | 46.46 |
| Solyc09g009410.2.1 | Tomato | cytosol, nucleus | 44.93 | 44.54 |
| CDY41854 | Canola | cytosol | 57.39 | 36.4 |
| CDX77335 | Canola | cytosol | 35.94 | 29.38 |
| Bra014107.1-P | Field mustard | cytosol, peroxisome, plastid | 50.43 | 27.49 |
| EES08930 | Sorghum | cytosol | 16.52 | 17.7 |
| KXG23186 | Sorghum | plastid | 11.3 | 15.98 |
| EER94850 | Sorghum | plastid | 20.58 | 13.65 |
| EES11818 | Sorghum | nucleus, plastid | 22.61 | 12.96 |
| KXG20501 | Sorghum | nucleus | 22.9 | 12.02 |
| EES12762 | Sorghum | cytosol | 22.03 | 8.57 |
| EER95491 | Sorghum | nucleus | 20.29 | 7.47 |
| OQU81634 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 2.32 | 4.44 |
| OQU91217 | Sorghum | plastid | 2.03 | 2.85 |
| OQU76815 | Sorghum | plastid | 1.45 | 2.37 |
| OQU89577 | Sorghum | plastid | 1.16 | 1.88 |
| OQU84751 | Sorghum | plastid | 0.87 | 1.48 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:7.11.3.2.1 | UniProt:C5X234 | InterPro:CIAO1/Cia1 | EnsemblPlants:EER98280 | ProteinID:EER98280 |
| ProteinID:EER98280.2 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009451 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016226 | GO:GO:0016787 |
| GO:GO:0043231 | GO:GO:0090305 | GO:GO:0097361 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| HAMAP:MF_03037 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR19920 | SMART:SM00320 | EnsemblPlantsGene:SORBI_3002G092300 | SUPFAM:SSF50978 | UniParc:UPI00081AD4BE | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : |
Description
hypothetical protein
Coordinates
chr2:-:9593114..9597058
Molecular Weight (calculated)
38173.3 Da
IEP (calculated)
4.908
GRAVY (calculated)
-0.438
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGASELRE AHRLTGHGDR VWALAWNPAP GPGSGPVLAS CSGDKTVRIW KRAPDGAWQC SDVLEDTHNR TVRSCAWSPN GKMLATGSFD ATTAVWEYKG
101: GDFECGHENE VKSVSWSPSG SLLATCSRDK TAWIWEVLPG NEFECASVLT GHTQDVKMVQ WHPVLDILVS VSYDNTIRVW ADDGDDEWHC VQTLTEANNC
201: GHSSTVWALS FNFKGDRMVT CSDDQTLKIW DTSADLSQPK TGEGHESWQH LSTLTGYHGR TIFSAHWSSE DIIASGAGDD AICLFTEEKS TMVERPSYRL
301: ILKKEKAHVM DINSVRWCPQ DPRLLASASD DGMVKLWELR GNVLD
101: GDFECGHENE VKSVSWSPSG SLLATCSRDK TAWIWEVLPG NEFECASVLT GHTQDVKMVQ WHPVLDILVS VSYDNTIRVW ADDGDDEWHC VQTLTEANNC
201: GHSSTVWALS FNFKGDRMVT CSDDQTLKIW DTSADLSQPK TGEGHESWQH LSTLTGYHGR TIFSAHWSSE DIIASGAGDD AICLFTEEKS TMVERPSYRL
301: ILKKEKAHVM DINSVRWCPQ DPRLLASASD DGMVKLWELR GNVLD
001: MDLMEKNLEL VEIQKLEGHT DRVWSVAWNP VSSHADGVSP ILASCSGDNT VRIWEQSSLS RSWTCKTVLE ETHTRTVRSC AWSPSGQLLA TASFDGTTGI
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP
Arabidopsis Description
CIA1Protein CIA1 [Source:UniProtKB/Swiss-Prot;Acc:O80990]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.