Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc08g065990.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26060.1 | Solyc08g065990.2.1 | AT4G16440.1 | 23104832 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400043378 | Potato | cytosol | 73.79 | 95.22 |
| VIT_08s0007g03360.t01 | Wine grape | cytosol | 74.64 | 76.16 |
| KRH67917 | Soybean | cytosol | 72.93 | 74.64 |
| GSMUA_Achr5P26190_001 | Banana | cytosol | 70.66 | 71.26 |
| CDX76728 | Canola | cytosol | 69.23 | 70.23 |
| AT2G26060.1 | Thale cress | cytosol | 69.8 | 69.6 |
| CDY11502 | Canola | cytosol | 67.81 | 68.79 |
| Bra007771.1-P | Field mustard | cytosol | 67.52 | 68.5 |
| Zm00001d019299_P001 | Maize | cytosol | 65.81 | 66.19 |
| EER98280 | Sorghum | cytosol, nucleus, plastid | 63.82 | 64.93 |
| HORVU7Hr1G101230.1 | Barley | cytosol | 61.82 | 64.2 |
| Os07t0252000-01 | Rice | cytosol | 64.1 | 63.74 |
| TraesCS7D01G435400.1 | Wheat | cytosol | 63.25 | 63.43 |
| TraesCS7B01G346200.1 | Wheat | cytosol, nucleus, plastid | 62.96 | 63.14 |
| TraesCS7A01G446500.1 | Wheat | cytosol | 62.96 | 63.14 |
| AT4G32990.1 | Thale cress | cytosol | 58.69 | 62.8 |
| TraesCS7B01G346100.1 | Wheat | cytosol | 60.97 | 61.14 |
| TraesCS7D01G435500.1 | Wheat | cytosol | 60.4 | 60.74 |
| TraesCS7A01G446400.2 | Wheat | cytosol | 59.83 | 60.52 |
| Solyc09g009410.2.1 | Tomato | cytosol, nucleus | 55.27 | 55.75 |
| KRH33352 | Soybean | plastid | 39.03 | 53.94 |
| CDY41854 | Canola | cytosol | 60.4 | 38.97 |
| CDX77335 | Canola | cytosol | 38.46 | 31.99 |
| Bra014107.1-P | Field mustard | cytosol, peroxisome, plastid | 53.56 | 29.7 |
| Solyc12g049100.1.1 | Tomato | cytosol | 22.22 | 22.1 |
| Solyc07g041080.2.1 | Tomato | cytosol, nucleus | 18.52 | 20.12 |
| Solyc12g009030.1.1 | Tomato | cytosol, nucleus | 18.52 | 20.12 |
| Solyc05g014420.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 19.66 | 18.65 |
| Solyc12g088570.1.1 | Tomato | cytosol | 19.09 | 18.41 |
| Solyc12g088540.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 24.79 | 17.43 |
| Solyc05g014460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 20.8 | 17.42 |
| Solyc12g088630.1.1 | Tomato | cytosol | 24.79 | 17.03 |
| Solyc12g088620.1.1 | Tomato | cytosol | 24.5 | 16.48 |
| Solyc04g078320.2.1 | Tomato | cytosol | 25.64 | 15.2 |
| Solyc04g016510.2.1 | Tomato | nucleus | 20.51 | 14.75 |
| Solyc06g065700.2.1 | Tomato | nucleus | 20.51 | 10.51 |
| Solyc03g097160.2.1 | Tomato | nucleus | 21.65 | 8.73 |
| Solyc10g039190.1.1 | Tomato | nucleus | 20.8 | 7.68 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:7.11.3.2.1 | InterPro:CIAO1/Cia1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016226 |
| GO:GO:0097361 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:K4CV17 | HAMAP:MF_03037 |
| PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19920 |
| SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:Solyc09g074400.2 | EnsemblPlants:Solyc09g074400.2.1 | UniParc:UPI000276B38E | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : |
Description
Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog [Source:UniProtKB/TrEMBL;Acc:K4CV17]
Coordinates
chr9:-:66193432..66202626
Molecular Weight (calculated)
39100.2 Da
IEP (calculated)
4.351
GRAVY (calculated)
-0.355
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFEDENFEL REIQRLEGHT DKVWSVAWKP ATGINGVSAV FASCSGDKTV RIWEEDSTGS FQCQAVLEET HTRTVRSCAW SPSGKFLATA SFDATTAIWE
101: NVGVDFECVS TLEGHDNEVK SVSWNNSGSL LATCGRDKSV WIWEVLPGNE FDCVSVLLGH TQDVKMVQWN PSMDTLFSCS YDNTIKVWIE DGDSDDWHCI
201: QTLGESNSGH TSTVWSLSFD ASGDKMVSCS DDLTIKVWTS KMQEGDQNAP WEHVCTLSGY HDRTIFSVHW SREGIIASGA ADDAICLFVE NNDNEVEGPS
301: FKLLLKKEKA HEMDVNSVQW NSGDRRLLAS ASDDGTVKIW ELVRLSGQKL L
101: NVGVDFECVS TLEGHDNEVK SVSWNNSGSL LATCGRDKSV WIWEVLPGNE FDCVSVLLGH TQDVKMVQWN PSMDTLFSCS YDNTIKVWIE DGDSDDWHCI
201: QTLGESNSGH TSTVWSLSFD ASGDKMVSCS DDLTIKVWTS KMQEGDQNAP WEHVCTLSGY HDRTIFSVHW SREGIIASGA ADDAICLFVE NNDNEVEGPS
301: FKLLLKKEKA HEMDVNSVQW NSGDRRLLAS ASDDGTVKIW ELVRLSGQKL L
001: MDLMEKNLEL VEIQKLEGHT DRVWSVAWNP VSSHADGVSP ILASCSGDNT VRIWEQSSLS RSWTCKTVLE ETHTRTVRSC AWSPSGQLLA TASFDGTTGI
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP
Arabidopsis Description
CIA1Protein CIA1 [Source:UniProtKB/Swiss-Prot;Acc:O80990]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.