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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc02g021650.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G29830.1 Solyc02g021650.2.1 AT4G05420.1 18223036
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400041481 Potato cytosol 97.52 97.52
Solyc12g009030.1.1 Tomato cytosol, nucleus 83.9 83.9
VIT_11s0016g01730.t01 Wine grape cytosol 70.59 71.03
Bra011139.1-P Field mustard cytosol 68.42 68.85
CDY43529 Canola cytosol 68.42 68.85
AT4G29830.1 Thale cress cytosol 68.42 68.85
KRH02663 Soybean cytosol, nucleus 68.42 68.85
CDX68590 Canola cytosol 68.11 68.54
CDY03567 Canola cytosol 67.8 68.22
CDY14200 Canola cytosol 67.49 67.91
KRH19247 Soybean cytosol, endoplasmic reticulum 67.49 67.91
GSMUA_Achr2P01810_001 Banana cytosol 66.56 66.98
Os11t0660300-01 Rice cytosol 62.23 62.23
EES08930 Sorghum cytosol 61.61 61.8
Zm00001d048691_P001 Maize cytosol, extracellular, mitochondrion 56.66 61.62
TraesCS4D01G145700.1 Wheat cytosol 61.3 61.49
TraesCS4A01G165700.1 Wheat cytosol, nucleus 60.68 60.87
TraesCS4B01G144300.1 Wheat cytosol 60.37 60.56
HORVU4Hr1G033170.1 Barley cytosol 60.68 57.31
Solyc12g049100.1.1 Tomato cytosol 20.74 18.98
Solyc09g074400.2.1 Tomato cytosol 20.12 18.52
Solyc09g009410.2.1 Tomato cytosol, nucleus 17.03 15.8
Solyc05g014420.1.1 Tomato cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 17.03 14.86
Solyc12g088540.1.1 Tomato cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 21.36 13.83
Solyc05g014460.1.1 Tomato cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 17.65 13.6
Solyc12g088630.1.1 Tomato cytosol 21.36 13.5
Solyc12g088620.1.1 Tomato cytosol 21.05 13.03
Solyc12g088570.1.1 Tomato cytosol 14.24 12.64
Solyc04g016510.2.1 Tomato nucleus 18.89 12.5
Solyc06g065700.2.1 Tomato nucleus 25.39 11.97
Solyc04g078320.2.1 Tomato cytosol 21.67 11.82
Solyc10g039190.1.1 Tomato nucleus 23.84 8.11
Solyc03g097160.2.1 Tomato nucleus 17.96 6.66
Protein Annotations
MapMan:15.3.6.1.6MapMan:16.8.1.2.6.3Gene3D:2.130.10.10InterPro:Apc4_WD40_domInterPro:G-protein_beta_WD-40_repGO:GO:0003674
GO:GO:0005488GO:GO:0005515InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986UniProt:K4CDY3
PFAM:PF00400PFAM:PF12894PRINTS:PR00320ScanProsite:PS00678PFscan:PS50082PFscan:PS50294
PANTHER:PTHR44090SMART:SM00320SUPFAM:SSF50978EnsemblPlantsGene:Solyc07g041080.2EnsemblPlants:Solyc07g041080.2.1UniParc:UPI000276B808
InterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeatInterPro:WD40_repeat_CSInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfSEG:seg
Description
No Description!
Coordinates
chr7:+:51786884..51790723
Molecular Weight (calculated)
34845.0 Da
IEP (calculated)
6.278
GRAVY (calculated)
-0.064
Length
323 amino acids
Sequence
(BLAST)
001: MKLASLDSIQ NAHEDSLWTA AWVRSDGDKP ALLLTGGLDE TVRLWDPTKL TCLHTNTGHC LGVVSVTAHP NRRIAASASL DSFIRVFEVD TNNTIATLEA
101: PPSEVWQLQF SPDGSTLAAA GGGSSSVKLW DTTQWQLVAT LSIPRQGGSQ PSERSGSKKF VLSVAWNPDG RLLACGSVDG TISVFDVARV KFLHFLEGHC
201: MPVRSLVFSP LLHESRILFS GSDDGHVHVY DAEGKTFLTS LSGHASWVLS VDVSPDGAAV ATGSSDKTIK LWDLKMRAAT QTLTNHTDQV WSVAFGPPSR
301: IDVRSCMLAS VSDDKSISFY QYS
Best Arabidopsis Sequence Match ( AT4G29830.1 )
(BLAST)
001: MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS LGVAALAAHP SGIIAASSSI DSFVRVFDVD TNATIAVLEA
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S
Arabidopsis Description
VIP3WD repeat-containing protein VIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZQ5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.