Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68590 | Canola | cytosol | 98.13 | 98.13 |
| Bra011139.1-P | Field mustard | cytosol | 97.82 | 97.82 |
| CDY43529 | Canola | cytosol | 97.51 | 97.51 |
| CDY03567 | Canola | cytosol | 96.88 | 96.88 |
| CDY14200 | Canola | cytosol | 96.57 | 96.57 |
| VIT_11s0016g01730.t01 | Wine grape | cytosol | 82.24 | 82.24 |
| KRH02663 | Soybean | cytosol, nucleus | 78.82 | 78.82 |
| GSMUA_Achr2P01810_001 | Banana | cytosol | 77.57 | 77.57 |
| KRH19247 | Soybean | cytosol, endoplasmic reticulum | 77.26 | 77.26 |
| PGSC0003DMT400000871 | Potato | cytosol | 70.41 | 69.97 |
| Os11t0660300-01 | Rice | cytosol | 70.41 | 69.97 |
| TraesCS4D01G145700.1 | Wheat | cytosol | 70.09 | 69.88 |
| Zm00001d048691_P001 | Maize | cytosol, extracellular, mitochondrion | 64.49 | 69.7 |
| Solyc12g009030.1.1 | Tomato | cytosol, nucleus | 70.09 | 69.66 |
| PGSC0003DMT400041481 | Potato | cytosol | 69.78 | 69.35 |
| TraesCS4A01G165700.1 | Wheat | cytosol, nucleus | 69.47 | 69.25 |
| TraesCS4B01G144300.1 | Wheat | cytosol | 69.47 | 69.25 |
| Solyc07g041080.2.1 | Tomato | cytosol, nucleus | 68.85 | 68.42 |
| EES08930 | Sorghum | cytosol | 68.22 | 68.01 |
| HORVU4Hr1G033170.1 | Barley | cytosol | 67.91 | 63.74 |
| AT2G26060.1 | Thale cress | cytosol | 19.0 | 17.33 |
| AT2G05720.1 | Thale cress | cytosol | 14.02 | 16.3 |
| AT4G32990.1 | Thale cress | cytosol | 16.51 | 16.16 |
| AT5G25150.1 | Thale cress | nucleus | 27.41 | 13.15 |
| AT2G41500.1 | Thale cress | nucleus, plastid | 21.18 | 12.27 |
| AT5G67320.1 | Thale cress | cytosol | 20.87 | 10.93 |
| AT5G16750.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 22.12 | 8.11 |
| AT3G21540.1 | Thale cress | nucleus | 20.87 | 7.02 |
Protein Annotations
| MapMan:15.3.6.1.6 | MapMan:16.8.1.2.6.3 | Gene3D:2.130.10.10 | EntrezGene:829105 | UniProt:A0A178UYC1 | ProteinID:AEE85683.1 |
| ArrayExpress:AT4G29830 | EnsemblPlantsGene:AT4G29830 | RefSeq:AT4G29830 | TAIR:AT4G29830 | RefSeq:AT4G29830-TAIR-G | EnsemblPlants:AT4G29830.1 |
| TAIR:AT4G29830.1 | InterPro:Apc4_WD40_dom | EMBL:BT008333 | ProteinID:CAB43658.1 | ProteinID:CAB79741.1 | InterPro:G-protein_beta_WD-40_rep |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009910 | GO:GO:0009987 | GO:GO:0010452 |
| GO:GO:0016043 | GO:GO:0016441 | GO:GO:0016593 | GO:GO:0019538 | GO:GO:0040029 | GO:GO:0051568 |
| GO:GO:0080008 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | RefSeq:NP_194712.1 | ProteinID:OAO98979.1 |
| PFAM:PF00400 | PFAM:PF12894 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR44090 | UniProt:Q9SZQ5 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI00000A3578 | Symbol:VIP3 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
VIP3WD repeat-containing protein VIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZQ5]
Coordinates
chr4:+:14597559..14599300
Molecular Weight (calculated)
34261.5 Da
IEP (calculated)
6.237
GRAVY (calculated)
-0.113
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS LGVAALAAHP SGIIAASSSI DSFVRVFDVD TNATIAVLEA
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.