Factsheet for TraesCS4D01G145700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G473400.1
TraesCS1D01G445700.1
TraesCS3A01G210100.2
TraesCS3B01G240600.1
TraesCSU01G002300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29830.1	TraesCS1B01G473400.1	AT4G05420.1	18223036
AT4G29830.1	TraesCS1D01G445700.1	AT4G05420.1	18223036
AT4G29830.1	TraesCS3A01G210100.2	AT4G05420.1	18223036
AT4G29830.1	TraesCS3B01G240600.1	AT4G05420.1	18223036
AT4G29830.1	TraesCSU01G002300.1	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G165700.1	Wheat	cytosol, nucleus	99.07	99.07
TraesCS4B01G144300.1	Wheat	cytosol	98.45	98.45
HORVU4Hr1G033170.1	Barley	cytosol	96.58	90.94
Os11t0660300-01	Rice	cytosol	88.82	88.54
EES08930	Sorghum	cytosol	88.51	88.51
Zm00001d048691_P001	Maize	cytosol, extracellular, mitochondrion	80.75	87.54
GSMUA_Achr2P01810_001	Banana	cytosol	75.47	75.7
KRH02663	Soybean	cytosol, nucleus	71.12	71.34
AT4G29830.1	Thale cress	cytosol	69.88	70.09
KRH19247	Soybean	cytosol, endoplasmic reticulum	69.88	70.09
Bra011139.1-P	Field mustard	cytosol	69.25	69.47
CDX68590	Canola	cytosol	69.25	69.47
CDY43529	Canola	cytosol	68.94	69.16
CDY03567	Canola	cytosol	68.32	68.54
CDY14200	Canola	cytosol	68.01	68.22
PGSC0003DMT400041481	Potato	cytosol	62.42	62.23
Solyc07g041080.2.1	Tomato	cytosol, nucleus	61.49	61.3
Solyc12g009030.1.1	Tomato	cytosol, nucleus	60.56	60.37
PGSC0003DMT400000871	Potato	cytosol	60.56	60.37
VIT_13s0084g00760.t01	Wine grape	plastid	18.63	54.55
TraesCS7D01G435400.1	Wheat	cytosol	18.01	16.57
TraesCS7D01G435500.1	Wheat	cytosol	17.7	16.33
TraesCS4D01G160600.1	Wheat	cytosol, nucleus	20.5	12.97
TraesCS2D01G182600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	20.81	12.36
TraesCS2D01G235100.1	Wheat	nucleus	21.12	12.23
TraesCS5D01G324200.2	Wheat	nucleus	24.53	12.04
TraesCS7D01G496500.1	Wheat	nucleus	24.22	11.98
TraesCS7D01G500800.1	Wheat	mitochondrion	21.12	7.71
TraesCS2D01G446600.2	Wheat	mitochondrion	21.12	7.67

Protein Annotations

MapMan:15.3.6.1.6	MapMan:16.8.1.2.6.3	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
PFAM:PF12894	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44090
SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS4D01G145700	EnsemblPlants:TraesCS4D01G145700.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	SEG:seg	:

Description

No Description!

Coordinates

chr4D:-:134635466..134638014

Molecular Weight (calculated)

33663.8 Da

IEP (calculated)

6.222

GRAVY (calculated)

0.027

Length

322 amino acids

Sequence
(BLAST)

001: MKLAGLKSVD GAHEDSIWAA AWVPAVDHRP TALLLTGSID ETVRAWQPDD LAAASPPAGG HALGVISLAA HPAGVIAAAV SIDSHVRVFD VDSGASIATL
101: DAAPSEVWGV QFHPKGVALA AAGGGSGSVK LWDTEKWQPI ASLPVPRPEG ARPDKTGSGK FVLSVAWSPD GKLLACGSMD GTIAVYDAVR MKFLHHLEGH
201: HMPVRSMVFS PVDPHVLLTG CDDSHIHIYD AKEKGLIGAM SGHASWVLSI DVSPDGMAVA TGSSDRTVRL WDINARASVQ TMSNHSDQVW AVAFRPPGGE
301: GVRAGRLASA SDDKSISLYD YS

Best Arabidopsis Sequence Match ( AT4G29830.1 )
(BLAST)

001: MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS LGVAALAAHP SGIIAASSSI DSFVRVFDVD TNATIAVLEA
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S

Arabidopsis Description

VIP3WD repeat-containing protein VIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZQ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.