Factsheet for HORVU4Hr1G033170.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G094530.1
HORVU3Hr1G050820.11
HORVU7Hr1G056610.1
HORVU7Hr1G056620.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29830.1	HORVU1Hr1G094530.1	AT4G05420.1	18223036
AT4G29830.1	HORVU3Hr1G050820.11	AT4G05420.1	18223036
AT4G29830.1	HORVU7Hr1G056610.1	AT4G05420.1	18223036
AT4G29830.1	HORVU7Hr1G056620.1	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G165700.1	Wheat	cytosol, nucleus	91.23	96.89
TraesCS4D01G145700.1	Wheat	cytosol	90.94	96.58
TraesCS4B01G144300.1	Wheat	cytosol	90.64	96.27
EES08930	Sorghum	cytosol	82.75	87.89
Os11t0660300-01	Rice	cytosol	82.75	87.62
Zm00001d048691_P001	Maize	cytosol, extracellular, mitochondrion	75.44	86.87
GSMUA_Achr2P01810_001	Banana	cytosol	70.47	75.08
KRH02663	Soybean	cytosol, nucleus	64.91	69.16
AT4G29830.1	Thale cress	cytosol	63.74	67.91
KRH19247	Soybean	cytosol, endoplasmic reticulum	63.74	67.91
Bra011139.1-P	Field mustard	cytosol	63.16	67.29
CDX68590	Canola	cytosol	63.16	67.29
CDY43529	Canola	cytosol	62.87	66.98
CDY03567	Canola	cytosol	62.28	66.36
CDY14200	Canola	cytosol	61.99	66.04
PGSC0003DMT400041481	Potato	cytosol	57.6	60.99
Solyc07g041080.2.1	Tomato	cytosol, nucleus	57.31	60.68
PGSC0003DMT400000871	Potato	cytosol	56.43	59.75
Solyc12g009030.1.1	Tomato	cytosol, nucleus	56.43	59.75
VIT_13s0084g00760.t01	Wine grape	plastid	17.25	53.64
HORVU7Hr1G101230.1	Barley	cytosol	16.67	16.86
HORVU2Hr1G032990.1	Barley	cytosol	17.25	15.17
HORVU0Hr1G022460.1	Barley	nucleus	21.05	14.72
HORVU4Hr1G034750.1	Barley	cytosol, nucleus, plastid	18.71	12.7
HORVU2Hr1G053480.9	Barley	mitochondrion	20.47	12.5
HORVU7Hr1G113760.2	Barley	nucleus	23.1	12.04
HORVU2Hr1G106110.11	Barley	mitochondrion	19.88	7.72
HORVU4Hr1G083410.1	Barley	endoplasmic reticulum	18.42	6.22

Protein Annotations

MapMan:15.3.6.1.6	MapMan:16.8.1.2.6.3	Gene3D:2.130.10.10	UniProt:A0A287NRL9	InterPro:Apc4_WD40_dom	InterPro:G-protein_beta_WD-40_rep
GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009791	GO:GO:0009908	GO:GO:0009910
GO:GO:0009987	GO:GO:0010452	GO:GO:0016043	GO:GO:0016441	GO:GO:0016593	GO:GO:0019538
GO:GO:0040029	GO:GO:0051568	GO:GO:0080008	EnsemblPlantsGene:HORVU4Hr1G033170	EnsemblPlants:HORVU4Hr1G033170.1	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF12894	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44090	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000B4694CA
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chrchr4H:+:229551147..229553802

Molecular Weight (calculated)

36177.8 Da

IEP (calculated)

6.724

GRAVY (calculated)

-0.049

Length

342 amino acids

Sequence
(BLAST)

001: RLSSQIKHLG FRLRERREGT MKLAGFKSVD GAHEDSIWAA AWVPAADHRP TALLLTGSID ETVRAWQPDD LAVASPPAGG HALGVVSLAA HPAGVIAAAV
101: SIDSHIRVFD VDSGASVTTL DAAPSEVWGV QFHPKGIALA AAGGGSGSVK LWDTEKWQPI ASLPVPRPEG ARPDKTGSGK FVLSVAWSPD GKLLACGSMD
201: GTIAVYDAVR MKFLHHLDGH HMPVRSMVFS PVDPHVLLTG CDDSHIHIYD AKEKGLIGAM SGHASWVLSI DVSPDGMAVV TGSSDRTIRL WDINARASVQ
301: TMSNHSDQVW AVAFRPPGGE GVRAGRLASA SDDKSISLYD YS

Best Arabidopsis Sequence Match ( AT4G29830.1 )
(BLAST)

001: MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS LGVAALAAHP SGIIAASSSI DSFVRVFDVD TNATIAVLEA
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S

Arabidopsis Description

VIP3WD repeat-containing protein VIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZQ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.