Factsheet for HORVU4Hr1G034750.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G163800.1	Wheat	cytosol, nucleus, plastid	95.63	94.7
TraesCS4A01G149100.1	Wheat	cytosol, nucleus, plastid	95.04	94.11
TraesCS4D01G160600.1	Wheat	cytosol, nucleus	94.84	93.91
EER94850	Sorghum	plastid	86.31	83.65
Os03t0355400-00	Rice	cytosol, nucleus, plastid	85.32	82.06
Os03t0355200-00	Rice	cytosol, nucleus, plastid	85.32	82.06
Zm00001d029188_P006	Maize	cytosol, nucleus, plastid, vacuole	86.11	78.77
GSMUA_Achr11P...	Banana	nucleus	62.5	72.08
HORVU2Hr1G032990.1	Barley	cytosol	53.17	68.89
Solyc04g016510.2.1	Tomato	nucleus	60.91	62.91
Bra004625.1-P	Field mustard	nucleus	60.32	62.17
CDX79933	Canola	nucleus	50.2	58.97
CDY23845	Canola	nucleus	50.2	58.84
Bra016929.1-P	Field mustard	nucleus, plastid	61.71	57.06
KRH31616	Soybean	nucleus	63.1	55.79
AT2G41500.1	Thale cress	nucleus, plastid	60.91	55.42
PGSC0003DMT400033081	Potato	cytosol, nucleus, plastid	64.09	55.4
KRH72083	Soybean	nucleus	61.71	54.56
AT2G05720.1	Thale cress	cytosol	29.37	53.62
CDY06918	Canola	cytosol, nucleus, peroxisome	51.39	53.4
VIT_08s0007g05930.t01	Wine grape	nucleus	64.09	49.01
CDY14776	Canola	mitochondrion	51.79	47.28
HORVU7Hr1G101230.1	Barley	cytosol	14.48	21.6
HORVU0Hr1G022460.1	Barley	nucleus	19.05	19.63
HORVU4Hr1G033170.1	Barley	cytosol	12.7	18.71
HORVU2Hr1G053480.9	Barley	mitochondrion	17.66	15.89
HORVU7Hr1G113760.2	Barley	nucleus	20.63	15.85
HORVU2Hr1G106110.11	Barley	mitochondrion	17.26	9.88
HORVU4Hr1G083410.1	Barley	endoplasmic reticulum	15.67	7.8

Protein Annotations

Gene3D:1.10.720.150	MapMan:16.4.1.3.2	Gene3D:2.130.10.10	EMBL:AK363037	EMBL:AK364693	ncoils:Coil
UniProt:F2DGM0	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:HORVU4Hr1G034750
EnsemblPlants:HORVU4Hr1G034750.1	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR036285	PFAM:PF00400
PFAM:PF08799	PRINTS:PR00320	InterPro:PRP4-like	InterPro:PRP4-like_sf	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19846	InterPro:Prp4	SMART:SM00320	SMART:SM00500	SUPFAM:SSF158230
SUPFAM:SSF50978	UniParc:UPI00020067BF	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DGM0]

Coordinates

chrchr4H:+:252632653..252637368

Molecular Weight (calculated)

56001.1 Da

IEP (calculated)

6.207

GRAVY (calculated)

-0.446

Length

504 amino acids

Sequence
(BLAST)

001: MSMENPRPLP PPMAPLPVHP PIAPIPIPVP PSTSAAADDD EAGYEVSDDH RAARERHERA VQELLQRRRA YAMAVPTNDS AVRTRLRRLS EPITLFGERE
101: MERRDRLRAL MVRLEADAQF DRLLRAQEDE QGAPDDDDTE QIQYPFFTEG TNQLLQARLD IAMYSLPRAK ARVDRAKRRL ADPDEDPEAE AGLVVKQAGD
201: FVLECSEVGD DRPLTGCSFS GDASMLATSS WSGIIKVWSM PQITKIATLK GHRERATDVA FSPVDNCLAT ASADKTAKLW NSDGSLLMSF DGHLDRLARV
301: AFHPSGKYLG TASFDKTWRL WDINTGTELL LQEGHSRSVY GVSFHPDGSL AASCGLDANA RVWDLRSGRL YCTLIGHVKP VLGVSFSPNG HLVATASEDN
401: FCRIWDLRTR QMLYSIPAHK SLISYVKFEP QEGYYLATSS YDTKAALWST RDCKAIKSLA GHESKVTSLD ISGDGQQIVT VSHDRTIKIW SCRGSARDNE
501: MKLD

Best Arabidopsis Sequence Match ( AT2G41500.2 )
(BLAST)

001: MEPNKDDNVS LAATAQISAP PVLQDASSLP GFSAIPPVVP PSFPPPMAPI PMMPHPPVAR PPTFRPPVSQ NGGVKTSDSD SESDDEHIEI SEESKQVRER
101: QEKALQDLLV KRRAAAMAVP TNDKAVRDRL RRLGEPITLF GEQEMERRAR LTQLLTRYDI NGQLDKLVKD HEEDVTPKEE VDDEVLEYPF FTEGPKELRE
201: ARIEIAKFSV KRAAVRIQRA KRRRDDPDED MDAETKWALK HAKHMALDCS NFGDDRPLTG CSFSRDGKIL ATCSLSGVTK LWEMPQVTNT IAVLKDHKER
301: ATDVVFSPVD DCLATASADR TAKLWKTDGT LLQTFEGHLD RLARVAFHPS GKYLGTTSYD KTWRLWDINT GAELLLQEGH SRSVYGIAFQ QDGALAASCG
401: LDSLARVWDL RTGRSILVFQ GHIKPVFSVN FSPNGYHLAS GGEDNQCRIW DLRMRKSLYI IPAHANLVSQ VKYEPQEGYF LATASYDMKV NIWSGRDFSL
501: VKSLAGHESK VASLDITADS SCIATVSHDR TIKLWTSSGN DDEDEEKETM DIDL

Arabidopsis Description

LISLIS [Source:UniProtKB/TrEMBL;Acc:A0A178VMW2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.