Factsheet for PGSC0003DMT400033081

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g016510.2.1	Tomato	nucleus	83.19	99.39
KRH31616	Soybean	nucleus	73.07	74.74
GSMUA_Achr11P...	Banana	nucleus	55.75	74.37
KRH72083	Soybean	nucleus	72.21	73.86
VIT_08s0007g05930.t01	Wine grape	nucleus	76.84	67.98
Bra004625.1-P	Field mustard	nucleus	56.78	67.69
CDY23845	Canola	nucleus	48.89	66.28
CDX79933	Canola	nucleus	48.71	66.2
TraesCS4D01G160600.1	Wheat	cytosol, nucleus	56.26	64.44
Bra016929.1-P	Field mustard	nucleus, plastid	60.21	64.4
TraesCS4A01G149100.1	Wheat	cytosol, nucleus, plastid	56.09	64.24
EER94850	Sorghum	plastid	57.29	64.23
HORVU4Hr1G034750.1	Barley	cytosol, nucleus, plastid	55.4	64.09
TraesCS4B01G163800.1	Wheat	cytosol, nucleus, plastid	55.92	64.05
TraesCS2B01G201600.1	Wheat	cytosol, nucleus, plastid	56.09	63.74
Os03t0355200-00	Rice	cytosol, nucleus, plastid	56.78	63.17
Os03t0355400-00	Rice	cytosol, nucleus, plastid	56.78	63.17
CDY06918	Canola	cytosol, nucleus, peroxisome	52.32	62.89
AT2G41500.1	Thale cress	nucleus, plastid	59.18	62.27
Zm00001d029188_P006	Maize	cytosol, nucleus, plastid, vacuole	57.12	60.44
TraesCS2D01G182600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	55.92	60.15
TraesCS2A01G175200.1	Wheat	plastid	55.75	58.77
AT2G05720.1	Thale cress	cytosol	27.62	58.33
CDY14776	Canola	mitochondrion	52.66	55.62
HORVU2Hr1G032990.1	Barley	cytosol	34.48	51.67
OQU81634	Sorghum	cytosol, mitochondrion, nucleus, plastid	15.78	51.11
OQU89577	Sorghum	plastid	17.15	46.95
OQU91217	Sorghum	plastid	19.21	45.53
PGSC0003DMT400039889	Potato	cytosol	2.23	22.41
PGSC0003DMT400093628	Potato	cytosol, mitochondrion	13.21	21.81
PGSC0003DMT400009959	Potato	cytosol	5.15	21.74
PGSC0003DMT400043378	Potato	cytosol	9.78	20.96
PGSC0003DMT400088760	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	16.12	19.54
PGSC0003DMT400000871	Potato	cytosol	10.81	19.5
PGSC0003DMT400093026	Potato	cytosol	16.64	18.98
PGSC0003DMT400041481	Potato	cytosol	10.46	18.89
PGSC0003DMT400066026	Potato	nucleus	17.15	10.53
PGSC0003DMT400034236	Potato	cytosol, nucleus, plastid	16.64	10.33
PGSC0003DMT400034226	Potato	cytosol	4.29	9.96

Protein Annotations

Gene3D:1.10.720.150	EntrezGene:102598086	MapMan:16.4.1.3.2	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
InterPro:IPR036285	UniProt:M1AYL0	PFAM:PF00400	PFAM:PF08799	EnsemblPlantsGene:PGSC0003DMG400012703	PGSC:PGSC0003DMG400012703
EnsemblPlants:PGSC0003DMT400033081	PRINTS:PR00320	InterPro:PRP4-like	InterPro:PRP4-like_sf	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19846	InterPro:Prp4	SMART:SM00320	SMART:SM00500	SUPFAM:SSF158230
SUPFAM:SSF50978	UniParc:UPI0002953D39	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_006358021.1	SEG:seg	:	:	:

Description

U4/U6 small nuclear ribonucleoprotein Prp4 [Source:PGSC_GENE;Acc:PGSC0003DMG400012703]

Coordinates

chr4:+:11189908..11195283

Molecular Weight (calculated)

64342.5 Da

IEP (calculated)

5.110

GRAVY (calculated)

-0.339

Length

583 amino acids

Sequence
(BLAST)

001: MDAMDAMDAE DEVPVSTSEP STLVDDNSTV VNAIGAVNLQ PVPAVIPPVV PMVILPPVVP AIAPRLAVPT PIPPPLAPLP VRPPVLRPPV AQNGEMQESD
101: SDSDLEEMVS GRGAAGSTQE YEISEESRIV RERQEKALQE LLMKRRAAAL AVPTNDMAVR ARLRRLGEPI TLFGEREMER RDRLRMLMAR LDAEGQLEKL
201: MKAHEDEEAA ASAAPAEEED IQYPFYTEGS KALLDARVEI AKYSLVKSAL RLHRARRKRD DPDEDVDAEV DWALKQAGSL ALDCSEIGDD RPLFGCSLSH
301: DGKMLATCSL SGIAKIWSMP QVQKVSTLKG HTERATDVAF SPTSNYLATA SADKTARLWN SEGSLLRTFE GHLDRLARIA FHPSGKYLGT ASFDKTWRLW
401: NVESGEELLL QEGHSRSVYG LSFHHDGSLV ASCGLDALVR VWDLRTGRSI LALEGHVKPV LGVSFSPNGY HLASGGEDNT CRIWDLRQRR SSYIIPAHSN
501: LISQVKFEPQ EGYFLATASY DMTAKVWSSR DFKPVKTLSG HEAKIMSLDV AADGQFITTV SYDRTIKLWS SKNIEKEEKM DMD

Best Arabidopsis Sequence Match ( AT2G41500.2 )
(BLAST)

001: MEPNKDDNVS LAATAQISAP PVLQDASSLP GFSAIPPVVP PSFPPPMAPI PMMPHPPVAR PPTFRPPVSQ NGGVKTSDSD SESDDEHIEI SEESKQVRER
101: QEKALQDLLV KRRAAAMAVP TNDKAVRDRL RRLGEPITLF GEQEMERRAR LTQLLTRYDI NGQLDKLVKD HEEDVTPKEE VDDEVLEYPF FTEGPKELRE
201: ARIEIAKFSV KRAAVRIQRA KRRRDDPDED MDAETKWALK HAKHMALDCS NFGDDRPLTG CSFSRDGKIL ATCSLSGVTK LWEMPQVTNT IAVLKDHKER
301: ATDVVFSPVD DCLATASADR TAKLWKTDGT LLQTFEGHLD RLARVAFHPS GKYLGTTSYD KTWRLWDINT GAELLLQEGH SRSVYGIAFQ QDGALAASCG
401: LDSLARVWDL RTGRSILVFQ GHIKPVFSVN FSPNGYHLAS GGEDNQCRIW DLRMRKSLYI IPAHANLVSQ VKYEPQEGYF LATASYDMKV NIWSGRDFSL
501: VKSLAGHESK VASLDITADS SCIATVSHDR TIKLWTSSGN DDEDEEKETM DIDL

Arabidopsis Description

LISLIS [Source:UniProtKB/TrEMBL;Acc:A0A178VMW2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.