CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU76815	Sorghum	plastid	82.16	82.94
OQU81634	Sorghum	cytosol, mitochondrion, nucleus, plastid	59.62	70.56
OQU91217	Sorghum	plastid	74.65	64.63
OQU84751	Sorghum	plastid	57.28	60.1
EER94850	Sorghum	plastid	70.42	28.85
CDX79933	Canola	nucleus	43.66	21.68
CDY23845	Canola	nucleus	43.66	21.63
GSMUA_Achr11P...	Banana	nucleus	42.25	20.59
Bra004625.1-P	Field mustard	nucleus	43.19	18.81
CDY06918	Canola	cytosol, nucleus, peroxisome	42.72	18.76
Solyc04g016510.2.1	Tomato	nucleus	40.38	17.62
KRH31616	Soybean	nucleus	46.95	17.54
PGSC0003DMT400033081	Potato	cytosol, nucleus, plastid	46.95	17.15
CDY14776	Canola	mitochondrion	43.66	16.85
KRH72083	Soybean	nucleus	45.07	16.84
Bra016929.1-P	Field mustard	nucleus, plastid	42.72	16.7
AT2G41500.1	Thale cress	nucleus, plastid	40.85	15.7
VIT_08s0007g05930.t01	Wine grape	nucleus	46.01	14.87
AT2G05720.1	Thale cress	cytosol	17.37	13.41
KXG20501	Sorghum	nucleus	10.8	3.5
EES11818	Sorghum	nucleus, plastid	7.98	2.82
EES12762	Sorghum	cytosol	9.86	2.37
EER95491	Sorghum	nucleus	10.33	2.35
EES08930	Sorghum	cytosol	2.82	1.86
EER98280	Sorghum	cytosol, nucleus, plastid	1.88	1.16
KXG23186	Sorghum	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:OQU89577	EnsemblPlantsGene:SORBI_3002G217133	InterPro:Prp4	PANTHER:PTHR19846	ProteinID:OQU89577	ProteinID:OQU89577.1
SEG:seg	UniParc:UPI0009DC83F4	UniProt:A0A1W0W5B0	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr2:-:60928385..60929089

Molecular Weight (calculated)

24105.1 Da

IEP (calculated)

7.909

GRAVY (calculated)

-0.397

Length

213 amino acids

Sequence
(BLAST)

001: MAPLPVPVHP PIAPIPVPPP PLPPPGAEAR LTTRSPTTTA PRGSRRRTYA MAVRACLRRL GEREIERHNR LRALMVQLEA NGQVDRILRA QEDDHAARTG
101: EEEQIQHPFF TKGTQELLKA RVDIARYSLP RAKARIEMAK RCHEDSDEDL EAEAELVVKQ AVEFVLECSE IGDDRPLIGC SFSRDASTLA TRYFLLIIQN
201: YMCFVHMLRT VTY

Best Arabidopsis Sequence Match ( AT2G41500.1 )
(BLAST)

001: MEPNKDDNVS LAATAQISAP PVLQDASSLP GFSAIPPVVP PSFPPPMAPI PMMPHPPVAR PPTFRPPVSQ NGGVKTSDSD SESDDEHIEI SEESKQVRER
101: QEKALQDLLV KRRAAAMAVP TNDKAVRDRL RRLGEPITLF GEQEMERRAR LTQLLTRYDI NGQLDKLVKD HEEDVTPKEE VDDEVLEYPF FTEGPKELRE
201: ARIEIAKFSV KRAAVRIQRA KRRRDDPDED MDAETKWALK HAKHMALDCS NFGDDRPLTG CSFSRDGKIL ATCSLSGVTK LWEMPQVTNT IAVLKDHKER
301: ATDVVFSPVD DCLATASADR TAKLWKTDGT LLQTFEGHLD RLARVAFHPS GKYLGTTSYD KTWRLWDINT GAELLLQEGH SRSVYGIAFQ QDGALAASCG
401: LDSLARVWDL RTGRSILVFQ GHIKPVFSVN FSPNGYHLAS GGEDNQCRIW DLRMRKSLYI IPAHANLVSQ VKYEPQEGYF LATASYDMKV NIWSGRDFSL
501: VKSLAGHESK VASLDITADS SCIATVSHDR TIKLWTSSGN DDEDEEKETM DIDL

Arabidopsis Description

LISLIS [Source:UniProtKB/TrEMBL;Acc:A0A178VMW2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.