Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79933 | Canola | nucleus | 80.07 | 51.52 |
| CDY23845 | Canola | nucleus | 79.35 | 50.93 |
| Bra004625.1-P | Field mustard | nucleus | 80.07 | 45.19 |
| AT2G41500.1 | Thale cress | nucleus, plastid | 80.07 | 39.89 |
| GSMUA_Achr11P... | Banana | nucleus | 57.25 | 36.16 |
| Solyc04g016510.2.1 | Tomato | nucleus | 58.7 | 33.2 |
| HORVU2Hr1G032990.1 | Barley | cytosol | 42.03 | 29.82 |
| TraesCS2B01G201600.1 | Wheat | cytosol, nucleus, plastid | 54.71 | 29.43 |
| Os03t0355400-00 | Rice | cytosol, nucleus, plastid | 55.8 | 29.39 |
| Os03t0355200-00 | Rice | cytosol, nucleus, plastid | 55.8 | 29.39 |
| HORVU4Hr1G034750.1 | Barley | cytosol, nucleus, plastid | 53.62 | 29.37 |
| TraesCS4B01G163800.1 | Wheat | cytosol, nucleus, plastid | 53.26 | 28.88 |
| EER94850 | Sorghum | plastid | 54.35 | 28.85 |
| TraesCS4A01G149100.1 | Wheat | cytosol, nucleus, plastid | 52.9 | 28.68 |
| KRH31616 | Soybean | nucleus | 59.06 | 28.6 |
| TraesCS4D01G160600.1 | Wheat | cytosol, nucleus | 52.54 | 28.49 |
| KRH72083 | Soybean | nucleus | 58.7 | 28.42 |
| Zm00001d029188_P006 | Maize | cytosol, nucleus, plastid, vacuole | 55.43 | 27.77 |
| PGSC0003DMT400033081 | Potato | cytosol, nucleus, plastid | 58.33 | 27.62 |
| TraesCS2D01G182600.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 52.9 | 26.94 |
| TraesCS2A01G175200.1 | Wheat | plastid | 52.9 | 26.4 |
| VIT_08s0007g05930.t01 | Wine grape | nucleus | 59.06 | 24.73 |
| OQU81634 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 14.86 | 22.78 |
| OQU89577 | Sorghum | plastid | 13.41 | 17.37 |
| OQU91217 | Sorghum | plastid | 14.49 | 16.26 |
| AT4G29830.1 | Thale cress | cytosol | 16.3 | 14.02 |
| AT2G26060.1 | Thale cress | cytosol | 16.3 | 12.78 |
| AT5G67320.1 | Thale cress | cytosol | 21.01 | 9.46 |
| AT5G25150.1 | Thale cress | nucleus | 22.1 | 9.12 |
| AT4G32990.1 | Thale cress | cytosol | 10.51 | 8.84 |
| AT3G21540.1 | Thale cress | nucleus | 20.65 | 5.97 |
| AT5G16750.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 18.12 | 5.71 |
Protein Annotations
| MapMan:16.4.1.3.2 | Gene3D:2.130.10.10 | EntrezGene:815121 | UniProt:A0A178VZ33 | ProteinID:AAD25639.1 | ProteinID:AEC05965.1 |
| ArrayExpress:AT2G05720 | EnsemblPlantsGene:AT2G05720 | RefSeq:AT2G05720 | TAIR:AT2G05720 | RefSeq:AT2G05720-TAIR-G | EnsemblPlants:AT2G05720.1 |
| TAIR:AT2G05720.1 | Unigene:At.52653 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0017070 |
| GO:GO:0019013 | GO:GO:0030529 | GO:GO:0030621 | GO:GO:0046540 | GO:GO:0080008 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | RefSeq:NP_178635.1 | ProteinID:OAP11126.1 | PFAM:PF00400 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0007611 | PO:PO:0009032 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR19846 | InterPro:Prp4 | UniProt:Q9SIB8 | SMART:SM00320 | SUPFAM:SSF50978 |
| UniParc:UPI00000AA9B8 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
Putative U4/U6 small nuclear ribonucleoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SIB8]
Coordinates
chr2:+:2147192..2148215
Molecular Weight (calculated)
31105.2 Da
IEP (calculated)
8.806
GRAVY (calculated)
-0.369
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MGPTELREAR IEITKDFIKR AALRIQRENR RRNDPDEDKN AETKLALKHC KDMVLGSSKF GDDRPLTGCS LSRDGKILVT CSLSGVPKLW EVPQVTNKIV
101: VLKGHKEHVT DVVFSSVDDE CLATASTDRT EKIWKTDGTL LQTFKASSGF DSLARVWDLR TARNILIFQG HIKQVLSVDF SPNGYHLASG GEDNQCRIWD
201: LRMRKLLYII PAHVNLVSQV KYEPQERYFL ATASHDMNVN IWSGRDFSLV KSLVGHESKV ASLDIAVDSS SRKCFA
101: VLKGHKEHVT DVVFSSVDDE CLATASTDRT EKIWKTDGTL LQTFKASSGF DSLARVWDLR TARNILIFQG HIKQVLSVDF SPNGYHLASG GEDNQCRIWD
201: LRMRKLLYII PAHVNLVSQV KYEPQERYFL ATASHDMNVN IWSGRDFSLV KSLVGHESKV ASLDIAVDSS SRKCFA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.