Factsheet for Zm00001d029188_P006

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
vacuole 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94850	Sorghum	plastid	90.02	95.38
Os03t0355400-00	Rice	cytosol, nucleus, plastid	83.85	88.17
Os03t0355200-00	Rice	cytosol, nucleus, plastid	83.85	88.17
TraesCS4B01G163800.1	Wheat	cytosol, nucleus, plastid	79.67	86.25
HORVU4Hr1G034750.1	Barley	cytosol, nucleus, plastid	78.77	86.11
TraesCS4A01G149100.1	Wheat	cytosol, nucleus, plastid	79.31	85.85
TraesCS4D01G160600.1	Wheat	cytosol, nucleus	79.13	85.66
TraesCS2B01G201600.1	Wheat	cytosol, nucleus, plastid	79.67	85.58
TraesCS2D01G182600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	79.85	81.18
TraesCS2A01G175200.1	Wheat	plastid	79.49	79.2
GSMUA_Achr11P...	Banana	nucleus	58.62	73.91
HORVU2Hr1G032990.1	Barley	cytosol	46.64	66.07
Solyc04g016510.2.1	Tomato	nucleus	57.17	64.55
Bra004625.1-P	Field mustard	nucleus	56.44	63.6
CDX79933	Canola	nucleus	47.19	60.61
CDY23845	Canola	nucleus	47.01	60.23
Bra016929.1-P	Field mustard	nucleus, plastid	58.26	58.9
KRH31616	Soybean	nucleus	60.8	58.77
KRH72083	Soybean	nucleus	59.53	57.54
PGSC0003DMT400033081	Potato	cytosol, nucleus, plastid	60.44	57.12
AT2G41500.1	Thale cress	nucleus, plastid	57.17	56.86
CDY06918	Canola	cytosol, nucleus, peroxisome	49.0	55.67
AT2G05720.1	Thale cress	cytosol	27.77	55.43
VIT_08s0007g05930.t01	Wine grape	nucleus	60.98	50.99
CDY14776	Canola	mitochondrion	49.18	49.09
Zm00001d044810_P001	Maize	nucleus	7.44	31.78
Zm00001d025112_P001	Maize	cytosol, nucleus, plastid	7.62	22.95
Zm00001d053142_P001	Maize	nucleus	6.35	21.74
Zm00001d048691_P001	Maize	cytosol, extracellular, mitochondrion	11.62	21.55
Zm00001d019299_P001	Maize	cytosol	13.25	20.92
Zm00001d016330_P001	Maize	extracellular	5.44	20.69
Zm00001d025048_P003	Maize	cytosol	17.79	17.47
Zm00001d046810_P002	Maize	nucleus	19.24	15.75
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	17.06	15.72
Zm00001d043471_P001	Maize	cytosol	9.26	13.35
Zm00001d002483_P002	Maize	mitochondrion	15.61	9.45
Zm00001d026195_P002	Maize	cytosol	15.24	9.1
Zm00001d027706_P004	Maize	nucleus	13.61	7.82

Protein Annotations

Gene3D:1.10.720.150	MapMan:16.4.1.3.2	Gene3D:2.130.10.10	UniProt:A0A1D6K3B9	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0008168	GO:GO:0016740	GO:GO:0032259	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
InterPro:IPR036285	ProteinID:ONL98144.1	PFAM:PF00400	PFAM:PF08799	PRINTS:PR00320	InterPro:PRP4-like
InterPro:PRP4-like_sf	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	SMART:SM00320	SMART:SM00500
SUPFAM:SSF158230	SUPFAM:SSF50978	UniParc:UPI000844D0C6	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d029188	EnsemblPlants:Zm00001d029188_P006	EnsemblPlants:Zm00001d029188_T006	SEG:seg

Description

COMPASS-like H3K4 histone methylase component WDR5B

Coordinates

chr1:+:61566224..61570528

Molecular Weight (calculated)

61404.9 Da

IEP (calculated)

6.088

GRAVY (calculated)

-0.397

Length

551 amino acids

Sequence
(BLAST)

001: MENPRPQAPA LTPPMAPLPV PIHPPIAPIP VPPPRVPAPA PAAAASMAST PTPSTGDGGE AEYEVSDDHR AARERHERAV QELLQRRRAY AMAVPTNDSA
101: VRARLRRLGE PITLFGEREM ERRDRLRALM VRLEADGQVD RLLRAQEDDQ AARIGEEEEE EQIEYPFFTE GSQELLKARL DIARYSLPRA KARIERAKRR
201: HEDPDEDPEA EAELVVKQAG EFVLECSEIG DDRPLTGCSF SRDASMLATS FNMVDYVLVL LLPFQEITIC LSTLCSSWSG IVKVWSMPQI TKVATLKGHT
301: ERATDVVFSP ADDCLATASA DRTAKLWKPD GSLLMSFDGH LDRLARLAFH PSGKYLGTAS FDKTWRLWDI NTGKELLLQE GHSRSVYGVS FHPDGSLAAS
401: CGLDAYARVW DLRSGRLFFT LKGHVKPVLG VSFSPNGYLV ATGSEDNFCR IWDLRKRQML YSIPAHKSII SHVKFEPQEG YYLATSSYDT KAALWSARDY
501: KPIKSLVGHE SKVTSLDISG DGQKIVTVSL DRTIKIWSCR SSTQDNEMEL D

Best Arabidopsis Sequence Match ( AT2G41500.2 )
(BLAST)

001: MEPNKDDNVS LAATAQISAP PVLQDASSLP GFSAIPPVVP PSFPPPMAPI PMMPHPPVAR PPTFRPPVSQ NGGVKTSDSD SESDDEHIEI SEESKQVRER
101: QEKALQDLLV KRRAAAMAVP TNDKAVRDRL RRLGEPITLF GEQEMERRAR LTQLLTRYDI NGQLDKLVKD HEEDVTPKEE VDDEVLEYPF FTEGPKELRE
201: ARIEIAKFSV KRAAVRIQRA KRRRDDPDED MDAETKWALK HAKHMALDCS NFGDDRPLTG CSFSRDGKIL ATCSLSGVTK LWEMPQVTNT IAVLKDHKER
301: ATDVVFSPVD DCLATASADR TAKLWKTDGT LLQTFEGHLD RLARVAFHPS GKYLGTTSYD KTWRLWDINT GAELLLQEGH SRSVYGIAFQ QDGALAASCG
401: LDSLARVWDL RTGRSILVFQ GHIKPVFSVN FSPNGYHLAS GGEDNQCRIW DLRMRKSLYI IPAHANLVSQ VKYEPQEGYF LATASYDMKV NIWSGRDFSL
501: VKSLAGHESK VASLDITADS SCIATVSHDR TIKLWTSSGN DDEDEEKETM DIDL

Arabidopsis Description

LISLIS [Source:UniProtKB/TrEMBL;Acc:A0A178VMW2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.