Factsheet for Zm00001d019299_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013272_P001
Zm00001d034012_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26060.1	Zm00001d013272_P001	AT4G16440.1	23104832
AT2G26060.1	Zm00001d034012_P001	AT4G16440.1	23104832

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER98280	Sorghum	cytosol, nucleus, plastid	91.98	93.04
Os07t0252000-01	Rice	cytosol	87.68	86.69
HORVU7Hr1G101230.1	Barley	cytosol	82.52	85.21
TraesCS7D01G435400.1	Wheat	cytosol	83.95	83.71
TraesCS7A01G446500.1	Wheat	cytosol	83.67	83.43
TraesCS7B01G346200.1	Wheat	cytosol, nucleus, plastid	83.67	83.43
TraesCS7A01G446400.2	Wheat	cytosol	78.51	78.96
TraesCS7B01G346100.1	Wheat	cytosol	79.08	78.86
TraesCS7D01G435500.1	Wheat	cytosol	78.22	78.22
GSMUA_Achr5P26190_001	Banana	cytosol	70.2	70.4
VIT_08s0007g03360.t01	Wine grape	cytosol	68.77	69.77
CDY11502	Canola	cytosol	65.62	66.19
CDX76728	Canola	cytosol	65.33	65.9
Bra007771.1-P	Field mustard	cytosol	65.33	65.9
KRH67917	Soybean	cytosol	64.76	65.89
Solyc09g074400.2.1	Tomato	cytosol	66.19	65.81
PGSC0003DMT400043378	Potato	cytosol	51.0	65.44
AT2G26060.1	Thale cress	cytosol	63.04	62.5
AT4G32990.1	Thale cress	cytosol	51.29	54.57
KRH33352	Soybean	plastid	34.96	48.03
Solyc09g009410.2.1	Tomato	cytosol, nucleus	44.13	44.25
CDY41854	Canola	cytosol	56.45	36.21
CDX77335	Canola	cytosol	35.82	29.62
Zm00001d044810_P001	Maize	nucleus	10.6	28.68
Bra014107.1-P	Field mustard	cytosol, peroxisome, plastid	49.86	27.49
Zm00001d025112_P001	Maize	cytosol, nucleus, plastid	11.46	21.86
Zm00001d016330_P001	Maize	extracellular	8.6	20.69
Zm00001d053142_P001	Maize	nucleus	9.46	20.5
Zm00001d048691_P001	Maize	cytosol, extracellular, mitochondrion	14.33	16.84
Zm00001d043471_P001	Maize	cytosol	17.48	15.97
Zm00001d025048_P003	Maize	cytosol	22.35	13.9
Zm00001d029188_P006	Maize	cytosol, nucleus, plastid, vacuole	20.92	13.25
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	22.06	12.88
Zm00001d046810_P002	Maize	nucleus	21.78	11.29
Zm00001d026195_P002	Maize	cytosol	20.34	7.69
Zm00001d002483_P002	Maize	mitochondrion	20.06	7.69
Zm00001d027706_P004	Maize	nucleus	20.63	7.51

Protein Annotations

Gene3D:2.130.10.10	MapMan:7.11.3.2.1	UniProt:A0A1D6HWP6	InterPro:CIAO1/Cia1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016226	GO:GO:0097361	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	HAMAP:MF_03037
ProteinID:ONM52649.1	ProteinID:ONM52651.1	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19920	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0008457713	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d019299	EnsemblPlants:Zm00001d019299_P001
EnsemblPlants:Zm00001d019299_T001	:	:	:	:	:

Description

Protein CIA1

Coordinates

chr7:-:26619326..26630239

Molecular Weight (calculated)

38591.9 Da

IEP (calculated)

4.824

GRAVY (calculated)

-0.345

Length

349 amino acids

Sequence
(BLAST)

001: MDVGAELREA HRLTGHADRV WALAWNPAPG PGSSPVLASC SGDKTVRIWK RAPDGAWQCS DVLEDTHNRT VRSCAWSPNG KLLATASFDA TTAVWEYNGA
101: DFECVATLEG HDNEVKSVSW SPSGSLLATC SRDKMVWIWE VLPGNEFECV SVLPGHTQDV KMVQWHPILD ILVSVSYDNS IRVWAGDGDD EWHCVQTLTE
201: ANNCGHSSTV WALSFNLKGD RMVTCSDDQT LKIWDTSADL SQPKTGEGHD SWQHLSTLTG YHGRTIFSAH WSSEDIIASG AGDDAICFFT EEKGSMVEKP
301: SYRLILKKEK AHVMDINCVR WCPQDPRLLA SASDDGTVKL WELRGNVLD

Best Arabidopsis Sequence Match ( AT2G26060.1 )
(BLAST)

001: MDLMEKNLEL VEIQKLEGHT DRVWSVAWNP VSSHADGVSP ILASCSGDNT VRIWEQSSLS RSWTCKTVLE ETHTRTVRSC AWSPSGQLLA TASFDGTTGI
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP

Arabidopsis Description

CIA1Protein CIA1 [Source:UniProtKB/Swiss-Prot;Acc:O80990]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.