CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01973
KRH51180

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26060.1	KRH01973	AT4G16440.1	23104832
AT2G26060.1	KRH51180	AT4G16440.1	23104832

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g03360.t01	Wine grape	cytosol	78.13	77.91
PGSC0003DMT400043378	Potato	cytosol	60.93	76.84
Solyc09g074400.2.1	Tomato	cytosol	74.64	72.93
GSMUA_Achr5P26190_001	Banana	cytosol	72.01	70.98
KRH33352	Soybean	plastid	51.31	69.29
CDY11502	Canola	cytosol	69.39	68.79
Bra007771.1-P	Field mustard	cytosol	69.1	68.5
CDX76728	Canola	cytosol	69.1	68.5
AT2G26060.1	Thale cress	cytosol	70.26	68.47
HORVU7Hr1G101230.1	Barley	cytosol	63.85	64.79
Zm00001d019299_P001	Maize	cytosol	65.89	64.76
Os07t0252000-01	Rice	cytosol	66.47	64.59
EER98280	Sorghum	cytosol, nucleus, plastid	64.14	63.77
TraesCS7B01G346200.1	Wheat	cytosol, nucleus, plastid	64.43	63.14
TraesCS7A01G446500.1	Wheat	cytosol	64.14	62.86
TraesCS7D01G435400.1	Wheat	cytosol	64.14	62.86
AT4G32990.1	Thale cress	cytosol	57.73	60.37
TraesCS7B01G346100.1	Wheat	cytosol	61.22	60.0
TraesCS7D01G435500.1	Wheat	cytosol	60.93	59.89
TraesCS7A01G446400.2	Wheat	cytosol	59.77	59.08
Solyc09g009410.2.1	Tomato	cytosol, nucleus	49.56	48.85
CDY41854	Canola	cytosol	62.68	39.52
CDX77335	Canola	cytosol	40.23	32.7
Bra014107.1-P	Field mustard	cytosol, peroxisome, plastid	55.69	30.17
KRG99418	Soybean	cytosol, extracellular, plastid	5.83	22.99
KRH04500	Soybean	cytosol	17.78	21.79
KRH02663	Soybean	cytosol, nucleus	17.78	19.0
KRH15679	Soybean	cytosol	7.0	18.9
KRH19247	Soybean	cytosol, endoplasmic reticulum	17.49	18.69
KRH04498	Soybean	mitochondrion	13.99	18.39
KRG94333	Soybean	cytosol	9.33	15.84
KRH28415	Soybean	nucleus	25.66	15.77
KRH61363	Soybean	nucleus	25.95	15.67
KRH58014	Soybean	nucleus	26.53	14.58
KRH52050	Soybean	cytosol, nucleus, peroxisome	25.66	13.77
KRH31616	Soybean	nucleus	20.41	12.28
KRH72083	Soybean	nucleus	20.41	12.28
KRH05348	Soybean	nucleus	19.83	10.33
KRH61671	Soybean	nucleus	20.12	10.31
KRG88454	Soybean	cytosol, mitochondrion, peroxisome, plastid	13.41	10.27
KRH52333	Soybean	nucleus	19.83	10.26
KRH04503	Soybean	nucleus	8.45	8.68
KRH03286	Soybean	nucleus	18.37	7.17
KRG96051	Soybean	nucleus	19.24	6.99
KRH67774	Soybean	nucleus, plastid	18.95	6.89
KRH57076	Soybean	plasma membrane	16.33	6.62

Protein Annotations

EntrezGene:100778826	Gene3D:2.130.10.10	MapMan:7.11.3.2.1	EMBL:ACUP02002089	InterPro:CIAO1/Cia1	InterPro:G-protein_beta_WD-40_rep
EnsemblPlantsGene:GLYMA_03G195400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016226	GO:GO:0097361
UniProt:I1JQ18	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH67917	ProteinID:KRH67917
ProteinID:KRH67917.1	HAMAP:MF_03037	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19920	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00023C212B	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

hypothetical protein

Coordinates

chr3:-:40559664..40566532

Molecular Weight (calculated)

37803.9 Da

IEP (calculated)

4.519

GRAVY (calculated)

-0.262

Length

343 amino acids

Sequence
(BLAST)

001: MMELKEIQRL EGHTDKVWSL AWNPTTGHAG IPLVFASCSG DKTVRIWEQN LSSGLWACTA VLDETHTRTV RSCAWSPSGK LLATASFDAT TAIWENVGGD
101: FECVSTLEGH ENEVKCVSWN AAGTLLATCS RDKSVWIWEV LPGNEFECVS VLQGHSQDVK MVKWHPTEDI LFSCSYDNSV KVWADEGDSD DWQCVQTLGE
201: PNNGHTSTVW ALSFNVSGDK MVTCSDDLTL KVWETESVGT QSGGGFAPWT HLCTLSGYHD RTIFSVHWSR EGIFASGAAD NAIRLFVDDN ESQVGGPLYK
301: LLLKKEKAHD MDINSVQWSP GEKPVLASAS DDGTIKVWEL TSY

Best Arabidopsis Sequence Match ( AT2G26060.1 )
(BLAST)

001: MDLMEKNLEL VEIQKLEGHT DRVWSVAWNP VSSHADGVSP ILASCSGDNT VRIWEQSSLS RSWTCKTVLE ETHTRTVRSC AWSPSGQLLA TASFDGTTGI
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP

Arabidopsis Description

CIA1Protein CIA1 [Source:UniProtKB/Swiss-Prot;Acc:O80990]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.