CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52050	Soybean	cytosol, nucleus, peroxisome	95.07	84.51
KRH04500	Soybean	cytosol	39.08	79.29
KRH04498	Soybean	mitochondrion	31.16	67.82
PGSC0003DMT400039889	Potato	cytosol	6.87	67.24
KRH28415	Soybean	nucleus	65.32	66.49
PGSC0003DMT400088760	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	56.16	66.32
PGSC0003DMT400093628	Potato	cytosol, mitochondrion	40.67	65.44
Solyc05g014420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	42.61	65.41
Solyc04g078320.2.1	Tomato	cytosol	68.13	65.37
Os07t0405100-01	Rice	cytosol	63.38	64.86
Zm00001d025048_P003	Maize	cytosol	63.91	64.71
TraesCS2B01G255700.1	Wheat	nucleus	63.56	64.7
TraesCS2A01G227200.3	Wheat	cytosol	63.38	64.4
TraesCS2D01G235100.1	Wheat	nucleus	63.03	64.39
GSMUA_Achr6P34780_001	Banana	cytosol	52.82	63.97
Solyc12g088540.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	55.11	62.73
PGSC0003DMT400093026	Potato	cytosol	56.16	62.43
HORVU2Hr1G053480.9	Barley	mitochondrion	61.09	61.96
Solyc05g014460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	45.25	61.34
EES11818	Sorghum	nucleus, plastid	64.44	60.8
Solyc12g088620.1.1	Tomato	cytosol	55.81	60.73
Solyc12g049100.1.1	Tomato	cytosol	37.68	60.62
Solyc12g088630.1.1	Tomato	cytosol	54.23	60.27
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	62.5	59.36
KRH58014	Soybean	nucleus	65.14	59.29
GSMUA_Achr6P34790_001	Banana	extracellular	16.02	58.33
Solyc12g088570.1.1	Tomato	cytosol	36.97	57.69
KRH04503	Soybean	nucleus	26.41	44.91
KRG99418	Soybean	cytosol, extracellular, plastid	4.05	26.44
KRH67917	Soybean	cytosol	15.67	25.95
KRH33352	Soybean	plastid	10.39	23.23
KRH15679	Soybean	cytosol	5.11	22.83
KRH02663	Soybean	cytosol, nucleus	11.09	19.63
KRH19247	Soybean	cytosol, endoplasmic reticulum	11.09	19.63
KRH72083	Soybean	nucleus	17.25	17.19
KRH31616	Soybean	nucleus	17.25	17.19
KRG88454	Soybean	cytosol, mitochondrion, peroxisome, plastid	11.09	14.06
KRH61671	Soybean	nucleus	16.55	14.05
KRH52333	Soybean	nucleus	16.2	13.88
KRH05348	Soybean	nucleus	15.85	13.68
KRG94333	Soybean	cytosol	4.4	12.38
KRH03286	Soybean	nucleus	14.79	9.56
KRH57076	Soybean	plasma membrane	13.73	9.22
KRH67774	Soybean	nucleus, plastid	15.14	9.12
KRG96051	Soybean	nucleus	15.14	9.11

Protein Annotations

Gene3D:1.20.960.30	EntrezGene:100783690	MapMan:12.3.2.1.4.3	Gene3D:2.130.10.10	EMBL:ACUP02002162	ncoils:Coil
InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_04G043300	GO:GO:0000118	GO:GO:0003674	GO:GO:0003714	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0006357	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0019538	GO:GO:1903507	InterPro:IPR001680
InterPro:IPR006594	InterPro:IPR015943	InterPro:IPR017986	UniProt:K7KI15	EnsemblPlants:KRH61363	ProteinID:KRH61363
ProteinID:KRH61363.1	InterPro:LisH	PFAM:PF00400	PFAM:PF08513	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PANTHER:PTHR22846	PANTHER:PTHR22846:SF2	SMART:SM00320
SMART:SM00667	SUPFAM:SSF50978	UniParc:UPI0002952FAF	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:3478150..3484572

Molecular Weight (calculated)

63889.8 Da

IEP (calculated)

5.496

GRAVY (calculated)

-0.595

Length

568 amino acids

Sequence
(BLAST)

001: MISITSTELN YLVFRYLHES GFTHSAFAFG YEAGIDKNKN DDSVVPPGAL VTFIQKGIQY LELEANLSGS DADMDEDFSF LQPLDLITKG PTELHNIVKA
101: KKENLRQHKF ESNKIMNDLS QDDSRRERVQ ETDKEMKEKE NEHRLEKIRL EKEKEQPKLE YKETQHIDQN HTEKQEDKIT VENLENRAQG GAEPMEISQS
201: SMLSPDDTPC SDVKLLKGHT SEVFACAWNP SAPLLASGSG DSTARIWKIA DGTCDSSVQN EPVNVVVLQH FKESTNEKSK DVTTLDWNGD GTLLATGSYD
301: GQARIWSIDG ELNCTLNKHR GPIFSLKWNK KGDYLLSGSV DKTAIVWNIK TGEWKQLFEF HTGPTLDVDW RNNVSFATCS TDKMIHVCKI GENRPIKTFS
401: GHQDEVNAIK WDPSGSLLAS CSDDHTAKIW SLKQDNFLHN LKEHVKGIYT IRWSPTGPGT NSPNQQLVLA SASFDSTIKL WDVELGSVLY TLNGHRDPVY
501: SVAFSPNGEY LASGSMDRYL HIWSVKEGKI VKTYTGKGGI FEVNWNKDGD KVAACFSNNI VCVMDFRM

Best Arabidopsis Sequence Match ( AT5G67320.1 )
(BLAST)

001: MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM

Arabidopsis Description

HOS15HOS15 [Source:UniProtKB/TrEMBL;Acc:A0A178UQT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.