CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31616	Soybean	nucleus	97.02	97.02
Solyc04g016510.2.1	Tomato	nucleus	66.14	77.25
PGSC0003DMT400033081	Potato	cytosol, nucleus, plastid	73.86	72.21
GSMUA_Achr11P...	Banana	nucleus	54.91	71.62
Bra004625.1-P	Field mustard	nucleus	58.6	68.3
CDY23845	Canola	nucleus	50.0	66.28
CDX79933	Canola	nucleus	49.82	66.2
Bra016929.1-P	Field mustard	nucleus, plastid	63.16	66.06
VIT_08s0007g05930.t01	Wine grape	nucleus	75.79	65.55
AT2G41500.1	Thale cress	nucleus, plastid	62.46	64.26
EER94850	Sorghum	plastid	58.25	63.85
CDY06918	Canola	cytosol, nucleus, peroxisome	54.04	63.51
TraesCS4D01G160600.1	Wheat	cytosol, nucleus	55.61	62.28
TraesCS4A01G149100.1	Wheat	cytosol, nucleus, plastid	55.44	62.08
TraesCS4B01G163800.1	Wheat	cytosol, nucleus, plastid	55.26	61.89
HORVU4Hr1G034750.1	Barley	cytosol, nucleus, plastid	54.56	61.71
Os03t0355400-00	Rice	cytosol, nucleus, plastid	56.67	61.64
Os03t0355200-00	Rice	cytosol, nucleus, plastid	56.67	61.64
TraesCS2B01G201600.1	Wheat	cytosol, nucleus, plastid	55.09	61.21
Zm00001d029188_P006	Maize	cytosol, nucleus, plastid, vacuole	57.54	59.53
AT2G05720.1	Thale cress	cytosol	28.42	58.7
TraesCS2D01G182600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	55.44	58.3
TraesCS2A01G175200.1	Wheat	plastid	54.91	56.6
CDY14776	Canola	mitochondrion	54.74	56.52
HORVU2Hr1G032990.1	Barley	cytosol	35.09	51.41
OQU81634	Sorghum	cytosol, mitochondrion, nucleus, plastid	15.44	48.89
OQU89577	Sorghum	plastid	16.84	45.07
OQU91217	Sorghum	plastid	19.3	44.72
KRH04500	Soybean	cytosol	11.75	23.93
KRH04498	Soybean	mitochondrion	10.18	22.22
KRH15679	Soybean	cytosol	4.91	22.05
KRG99418	Soybean	cytosol, extracellular, plastid	3.16	20.69
KRH67917	Soybean	cytosol	12.28	20.41
KRH19247	Soybean	cytosol, endoplasmic reticulum	10.88	19.31
KRH02663	Soybean	cytosol, nucleus	10.7	19.0
KRH28415	Soybean	nucleus	17.37	17.74
KRH33352	Soybean	plastid	7.72	17.32
KRH61363	Soybean	nucleus	17.19	17.25
KRH58014	Soybean	nucleus	18.6	16.99
KRH52333	Soybean	nucleus	18.6	15.99
KRH61671	Soybean	nucleus	18.42	15.7
KRH52050	Soybean	cytosol, nucleus, peroxisome	16.84	15.02
KRH05348	Soybean	nucleus	17.19	14.89
KRG88454	Soybean	cytosol, mitochondrion, peroxisome, plastid	10.35	13.17
KRG94333	Soybean	cytosol	4.56	12.87
KRH04503	Soybean	nucleus	7.02	11.98
KRH03286	Soybean	nucleus	15.26	9.9
KRH57076	Soybean	plasma membrane	14.56	9.81
KRG96051	Soybean	nucleus	16.14	9.75
KRH67774	Soybean	nucleus, plastid	15.96	9.65

Protein Annotations

Gene3D:1.10.720.150	EntrezGene:100800927	MapMan:16.4.1.3.2	Gene3D:2.130.10.10	EMBL:ACUP02001162	ncoils:Coil
InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_02G190600	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0017070	GO:GO:0030621
GO:GO:0046540	UniProt:I1JGD6	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR036285
ProteinID:KRH72081.1	ProteinID:KRH72082.1	EnsemblPlants:KRH72083	ProteinID:KRH72083	ProteinID:KRH72083.1	ProteinID:KRH72084.1
PFAM:PF00400	PFAM:PF08799	PRINTS:PR00320	InterPro:PRP4-like	InterPro:PRP4-like_sf	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19846	InterPro:Prp4	SMART:SM00320	SMART:SM00500
SUPFAM:SSF158230	SUPFAM:SSF50978	UniParc:UPI0002337357	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:35829814..35834792

Molecular Weight (calculated)

63117.4 Da

IEP (calculated)

5.761

GRAVY (calculated)

-0.493

Length

570 amino acids

Sequence
(BLAST)

001: MEVEKENTTS TITAEPSVSA SDGQDPVSSV NASLPDPMQP VIPQVIAPFV VPSLAPIPAI PPPRPLAPLP VRSPVIRPPV PQNGEVGSSD SDSDNDDSNA
101: RINQGGGEYE ISEESRLVRE RQEKAMQELM MKRRAAALAV PTNDMAVRAR LRHLGEAITL FGEREMERRD RLRMIMAKLD AEGQLEKLMK AHEEEEAVAS
201: ASKDEAEEEL QYPFYTEGSK ALLDSRIYIA KYSLARAALR IQRAQRRRDD PDEDMDAEMD WALKQAGNLS LEFSEIGDDR PLSGCSFSRD GKWLATCSLT
301: GASKLWSMPK IKKHSIFKGH TERATDVAYS PVHDHLATAS ADRTAKYWNQ GSLLKTFEGH LDRLARIAFH PSGKYLGTAS FDKTWRLWDI ETGDELLLQE
401: GHSRSVYGLA FHNDGSLAAS CGLDSLARVW DLRTGRSILA LEGHVKPVLS ISFSPNGYHL ATGGEDNTCR IWDLRKKKSF YTIPAHSNLI SQVKFEPHEG
501: YFLVTASYDM TAKVWSGRDF KPVKTLSGHE AKVTSVDVLG DGGSIVTVSH DRTIKLWSSN PTDEQAMDVD

Best Arabidopsis Sequence Match ( AT2G41500.2 )
(BLAST)

001: MEPNKDDNVS LAATAQISAP PVLQDASSLP GFSAIPPVVP PSFPPPMAPI PMMPHPPVAR PPTFRPPVSQ NGGVKTSDSD SESDDEHIEI SEESKQVRER
101: QEKALQDLLV KRRAAAMAVP TNDKAVRDRL RRLGEPITLF GEQEMERRAR LTQLLTRYDI NGQLDKLVKD HEEDVTPKEE VDDEVLEYPF FTEGPKELRE
201: ARIEIAKFSV KRAAVRIQRA KRRRDDPDED MDAETKWALK HAKHMALDCS NFGDDRPLTG CSFSRDGKIL ATCSLSGVTK LWEMPQVTNT IAVLKDHKER
301: ATDVVFSPVD DCLATASADR TAKLWKTDGT LLQTFEGHLD RLARVAFHPS GKYLGTTSYD KTWRLWDINT GAELLLQEGH SRSVYGIAFQ QDGALAASCG
401: LDSLARVWDL RTGRSILVFQ GHIKPVFSVN FSPNGYHLAS GGEDNQCRIW DLRMRKSLYI IPAHANLVSQ VKYEPQEGYF LATASYDMKV NIWSGRDFSL
501: VKSLAGHESK VASLDITADS SCIATVSHDR TIKLWTSSGN DDEDEEKETM DIDL

Arabidopsis Description

LISLIS [Source:UniProtKB/TrEMBL;Acc:A0A178VMW2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.