Factsheet for GSMUA_Achr11P20280_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g016510.2.1	Tomato	nucleus	74.14	66.39
TraesCS4B01G163800.1	Wheat	cytosol, nucleus, plastid	73.68	63.26
EER94850	Sorghum	plastid	74.6	62.69
HORVU4Hr1G034750.1	Barley	cytosol, nucleus, plastid	72.08	62.5
TraesCS4D01G160600.1	Wheat	cytosol, nucleus	72.77	62.48
TraesCS4A01G149100.1	Wheat	cytosol, nucleus, plastid	72.54	62.28
Os03t0355200-00	Rice	cytosol, nucleus, plastid	73.68	61.45
Os03t0355400-00	Rice	cytosol, nucleus, plastid	73.68	61.45
Bra004625.1-P	Field mustard	nucleus	68.42	61.15
TraesCS2B01G201600.1	Wheat	cytosol, nucleus, plastid	71.4	60.82
Zm00001d029188_P006	Maize	cytosol, nucleus, plastid, vacuole	73.91	58.62
CDY23845	Canola	nucleus	56.98	57.91
CDX79933	Canola	nucleus	56.75	57.81
AT2G05720.1	Thale cress	cytosol	36.16	57.25
TraesCS2D01G182600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	70.48	56.83
OQU81634	Sorghum	cytosol, mitochondrion, nucleus, plastid	23.11	56.11
TraesCS2A01G175200.1	Wheat	plastid	70.94	56.06
PGSC0003DMT400033081	Potato	cytosol, nucleus, plastid	74.37	55.75
KRH31616	Soybean	nucleus	72.54	55.61
Bra016929.1-P	Field mustard	nucleus, plastid	69.34	55.6
KRH72083	Soybean	nucleus	71.62	54.91
HORVU2Hr1G032990.1	Barley	cytosol	48.51	54.5
AT2G41500.1	Thale cress	nucleus, plastid	67.05	52.89
CDY06918	Canola	cytosol, nucleus, peroxisome	57.67	51.96
VIT_08s0007g05930.t01	Wine grape	nucleus	76.43	50.68
CDY14776	Canola	mitochondrion	57.67	45.65
OQU89577	Sorghum	plastid	20.59	42.25
OQU91217	Sorghum	plastid	22.43	39.84
GSMUA_Achr9P22400_001	Banana	cytosol	9.15	23.39
GSMUA_Achr5P26190_001	Banana	cytosol	17.16	21.55
GSMUA_Achr2P01810_001	Banana	cytosol	13.96	19.0
GSMUA_Achr6P34790_001	Banana	extracellular	6.41	17.95
GSMUA_Achr6P34780_001	Banana	cytosol	14.87	13.86
GSMUA_Achr7P26980_001	Banana	nucleus	19.91	11.39
GSMUA_Achr11P...	Banana	cytosol, golgi, plastid	17.39	8.09
GSMUA_Achr11P...	Banana	mitochondrion	16.7	7.93
GSMUA_Achr9P22410_001	Banana	cytosol	4.58	5.36

Protein Annotations

Gene3D:1.10.720.150	MapMan:16.4.1.3.2	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr11G20280_001	EnsemblPlants:GSMUA_Achr11P20280_001	EnsemblPlants:GSMUA_Achr11T20280_001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR036285	UniProt:M0RTV8	PFAM:PF00400	PFAM:PF08799
PRINTS:PR00320	InterPro:PRP4-like	InterPro:PRP4-like_sf	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19846	InterPro:Prp4	SMART:SM00320	SMART:SM00500	SUPFAM:SSF158230	SUPFAM:SSF50978
UniParc:UPI00029623DF	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G20280_001]

Coordinates

chr11:-:21291883..21296565

Molecular Weight (calculated)

48645.2 Da

IEP (calculated)

6.463

GRAVY (calculated)

-0.456

Length

437 amino acids

Sequence
(BLAST)

001: MAVPTNDSAV RARLRRLGEP VTLFGEREME RRDRLRSIMV RLDSEGQLER LLKAHEDEQA AVATAGAAAE DEGPHQYPFY TEGSKELFEA RVEIAKWSVA
101: RAKARLERAR RRRDDPDEDE EAEAEFVVNQ AGGLVLECSE IGDDRPLSGC SFSHDGTMLA TSAFSGVAKL WSMPQVTKVA TLKGHTERLT DVAFSPVDNH
201: IVTASADHTA KLWNTDGSLL RSFDGHLDRL ARVAFHPSGK YIGTASFDKT WRLWDINTGM ELLLQEGHSR SIYGICFHPD GSLAASSGLD ALARVWDLRT
301: GRSILAFEGH VKPVLGLSFS PNGYRLATGS EDNTCRIWDL RKRKSLYTIP AHSHLISQVK FEPQEGFFLA TASYDTKAMV WSAQDFKPIK TLSGHEAKIT
401: SLDITRDGQQ IATVSHDRTI KIWTSRSNGK ENDMDLD

Best Arabidopsis Sequence Match ( AT2G41500.2 )
(BLAST)

001: MEPNKDDNVS LAATAQISAP PVLQDASSLP GFSAIPPVVP PSFPPPMAPI PMMPHPPVAR PPTFRPPVSQ NGGVKTSDSD SESDDEHIEI SEESKQVRER
101: QEKALQDLLV KRRAAAMAVP TNDKAVRDRL RRLGEPITLF GEQEMERRAR LTQLLTRYDI NGQLDKLVKD HEEDVTPKEE VDDEVLEYPF FTEGPKELRE
201: ARIEIAKFSV KRAAVRIQRA KRRRDDPDED MDAETKWALK HAKHMALDCS NFGDDRPLTG CSFSRDGKIL ATCSLSGVTK LWEMPQVTNT IAVLKDHKER
301: ATDVVFSPVD DCLATASADR TAKLWKTDGT LLQTFEGHLD RLARVAFHPS GKYLGTTSYD KTWRLWDINT GAELLLQEGH SRSVYGIAFQ QDGALAASCG
401: LDSLARVWDL RTGRSILVFQ GHIKPVFSVN FSPNGYHLAS GGEDNQCRIW DLRMRKSLYI IPAHANLVSQ VKYEPQEGYF LATASYDMKV NIWSGRDFSL
501: VKSLAGHESK VASLDITADS SCIATVSHDR TIKLWTSSGN DDEDEEKETM DIDL

Arabidopsis Description

LISLIS [Source:UniProtKB/TrEMBL;Acc:A0A178VMW2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.