Subcellular Localization
min:
: max
Winner_takes_all: golgi, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plastid 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G370000.1 | Wheat | nucleus | 72.34 | 72.34 |
| TraesCS4B01G317800.1 | Wheat | nucleus | 72.23 | 72.23 |
| EER95491 | Sorghum | nucleus | 71.38 | 71.61 |
| Os03t0151700-01 | Rice | nucleus | 70.96 | 70.96 |
| Zm00001d027706_P004 | Maize | nucleus | 71.38 | 69.97 |
| VIT_08s0007g04690.t01 | Wine grape | nucleus | 69.89 | 69.01 |
| HORVU4Hr1G083410.1 | Barley | endoplasmic reticulum | 72.55 | 67.32 |
| KRH67774 | Soybean | nucleus, plastid | 67.23 | 67.02 |
| KRG96051 | Soybean | nucleus | 67.13 | 66.84 |
| PGSC0003DMT400066026 | Potato | nucleus | 66.81 | 66.11 |
| Solyc10g039190.1.1 | Tomato | nucleus | 66.7 | 66.0 |
| CDY22910 | Canola | nucleus | 64.68 | 65.31 |
| CDY54973 | Canola | nucleus | 64.47 | 65.09 |
| Bra039543.1-P | Field mustard | nucleus | 64.68 | 64.41 |
| PGSC0003DMT400034236 | Potato | cytosol, nucleus, plastid | 63.51 | 63.58 |
| AT3G21540.1 | Thale cress | nucleus | 63.94 | 62.93 |
| GSMUA_Achr9P22400_001 | Banana | cytosol | 4.57 | 25.15 |
| GSMUA_Achr2P01810_001 | Banana | cytosol | 7.02 | 20.56 |
| GSMUA_Achr5P26190_001 | Banana | cytosol | 7.55 | 20.4 |
| GSMUA_Achr11P... | Banana | nucleus | 8.09 | 17.39 |
| GSMUA_Achr6P34790_001 | Banana | extracellular | 2.87 | 17.31 |
| GSMUA_Achr11P... | Banana | mitochondrion | 15.11 | 15.42 |
| GSMUA_Achr7P26980_001 | Banana | nucleus | 11.28 | 13.87 |
| GSMUA_Achr9P22410_001 | Banana | cytosol | 5.32 | 13.4 |
| GSMUA_Achr6P34780_001 | Banana | cytosol | 6.49 | 13.01 |
Protein Annotations
| MapMan:17.1.3.2.1.3.3 | Gene3D:2.130.10.10 | ncoils:Coil | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 |
| EnsemblPlantsGene:GSMUA_Achr11G02020_001 | EnsemblPlants:GSMUA_Achr11P02020_001 | EnsemblPlants:GSMUA_Achr11T02020_001 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| UniProt:M0RNN2 | PFAM:PF00400 | PFAM:PF04003 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR19853 | PANTHER:PTHR19853:SF0 | SMART:SM00320 | SUPFAM:SSF101908 | SUPFAM:SSF50978 |
| InterPro:SSU_processome_Utp12 | UniParc:UPI000296BCBE | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
Putative WD repeat-containing protein 3 [Source:GMGC_GENE;Acc:GSMUA_Achr11G02020_001]
Coordinates
chr11:-:1395390..1405903
Molecular Weight (calculated)
105038.0 Da
IEP (calculated)
7.220
GRAVY (calculated)
-0.261
Length
940 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKSYLRYEP GLGFGVIASL DSKITYDPSG LHLLAPALDK LALWNLKQGL ASKTFSPSSR SSHTLAVTSV AASPLSSSTS IASGHADGSI RLWDYEKATC
101: EATLNGHKSA VTALRYNHLS SLLASGGKDC DVILWDVVGE AGLFRLRGHR DQACPCYLVF LDSGKKLVTC SKDKFIRVWD LEMQHCIQIV SGHHSEVWSL
201: DVDQKERFLV SGSADTELRF YQIRTNAEMV ENESKWEILK QFGEIQRQNK DRVATLRFNK SGSLLACQVA GKSVEIYRVL DDVESMRKAK RRLHRKKEKV
301: MAKAMVVDNE NGGFVDSLSS QELQHPTVAV SDMFKLLQTF RASKKICSIA FCPNVPKVGL ATLSLSLNNN MLETHLIDTD KISKLYSIEL HGHRSDIRSV
401: TLSSDNDLLM STSHNAVKIW NPSTGVCLRT IESGYGLCSS FVPGNRYALV GTKSGTLEIL DVGSGSSIEV IEAHAGSIRS IVPIPDENGS VSSCGFVTGS
501: ADHDVKFWEY QLLQKPVNDS KQLTVTNVRT LKMNDDVLAV CISPNSKHLA VSLLDCTIKV FFVDSLKFFL SLYGHKLPVL CMDISSDGDL IVSGSADKNL
601: KIWGLDFGDC HKSIFAHADS VMDVKFVRNT HYMFSVGKDR LVKYWDADKF ELLLTLEGHH AEVWCLAVSN RGDFIVTGSH DRSIRRWDRT EEPFFIEEER
701: EKRLEELFES DLDNLNEDRY APKELVPDEG SVGVPGKKTK ETLSATDLVI DALDMADAEI KRIDQHKEDQ KNGRGGEFQT NILMRGLSPS DYVLHTLANV
801: NTNDLEQTLL SLPFSDALKL MSYLKEWVLV PDKVELVCRV TTVLLQTHHN QLTTAVAARP VLIVLKDILH ERVKECKDTI GFNLAAMDHL KELMSMRSDA
901: PFRDAKAKLM EIRQWQSKRT ERGGDTNEKR RKKKQKPASQ
101: EATLNGHKSA VTALRYNHLS SLLASGGKDC DVILWDVVGE AGLFRLRGHR DQACPCYLVF LDSGKKLVTC SKDKFIRVWD LEMQHCIQIV SGHHSEVWSL
201: DVDQKERFLV SGSADTELRF YQIRTNAEMV ENESKWEILK QFGEIQRQNK DRVATLRFNK SGSLLACQVA GKSVEIYRVL DDVESMRKAK RRLHRKKEKV
301: MAKAMVVDNE NGGFVDSLSS QELQHPTVAV SDMFKLLQTF RASKKICSIA FCPNVPKVGL ATLSLSLNNN MLETHLIDTD KISKLYSIEL HGHRSDIRSV
401: TLSSDNDLLM STSHNAVKIW NPSTGVCLRT IESGYGLCSS FVPGNRYALV GTKSGTLEIL DVGSGSSIEV IEAHAGSIRS IVPIPDENGS VSSCGFVTGS
501: ADHDVKFWEY QLLQKPVNDS KQLTVTNVRT LKMNDDVLAV CISPNSKHLA VSLLDCTIKV FFVDSLKFFL SLYGHKLPVL CMDISSDGDL IVSGSADKNL
601: KIWGLDFGDC HKSIFAHADS VMDVKFVRNT HYMFSVGKDR LVKYWDADKF ELLLTLEGHH AEVWCLAVSN RGDFIVTGSH DRSIRRWDRT EEPFFIEEER
701: EKRLEELFES DLDNLNEDRY APKELVPDEG SVGVPGKKTK ETLSATDLVI DALDMADAEI KRIDQHKEDQ KNGRGGEFQT NILMRGLSPS DYVLHTLANV
801: NTNDLEQTLL SLPFSDALKL MSYLKEWVLV PDKVELVCRV TTVLLQTHHN QLTTAVAARP VLIVLKDILH ERVKECKDTI GFNLAAMDHL KELMSMRSDA
901: PFRDAKAKLM EIRQWQSKRT ERGGDTNEKR RKKKQKPASQ
001: MVKAYQRYDA ATSFGVISSV DSNIAYDSTG KYVLAPALEK VGIWHVRQGV CSKTLTPSSS RGGPSLAVTS IASSASSLVA VGYADGSIRI WDTEKGTCEV
101: NFNSHKGAVT ALRYNKVGSM LASGSKDNDI ILWDVVGESG LFRLRGHRDQ VTDLVFLDGG KKLVSSSKDK FLRVWDLETQ HCMQIVSGHH SEVWSVDTDP
201: EERYVVTGSA DQELRFYAVK EYSSNGSLVS DSNANEIKAS EEHSTENKWE ILKLFGEIQR QTKDRVARVR FNVSGKLLAC QMAGKTIEIF RVLDEAEAKQ
301: KAKRRLRRKE KKSSKVGDEN STANGEASAK IELADAVSSP TVLDVFKLLQ VIRAGRKISS FSFCPTAPKE SLGTLALSLN NNSLEFYSLK SSENAKTVTI
401: EHQGHRSDVR SVTLSEDNTL LMSTSHSEVK IWNPSTGSCL RTIDSGYGLC SLIVPQNKYG IVGTKSGVLE IIDIGSATKV EEVKAHGGTI WSITPIPNDS
501: GFVTVSADHE VKFWEYQVKQ KSGKATKKLT VSNVKSMKMN DDVLAVAISP DAKHIAVALL DSTVKVFYMD SLKFYLSLYG HKLPVMCIDI SSDGELIVTG
601: SQDKNLKIWG LDFGDCHKSI FAHGDSVMGV KFVRNTHYLF SIGKDRLVKY WDADKFEHLL TLEGHHAEIW CLAISNRGDF LVTGSHDRSM RRWDRSEEPF
701: FLEEEKEKRL EELFESEIDN AADDRHGPME EIPEEGVAAL AGKKTIDVLS AADSIIDALE VAEDETKRHA AYEEEKTKGK VPEYLPNAVM FGLSPSEYVL
801: RAISNVRTND LEQTLLALPF SDSLKFLCYM KDWSLIPEKV ELVSRIATII LQTHHNQLVT TPSARPILSV LRDILYSEIK ACKDTIGFNL AAMDHVKQMM
901: DARSDAPFKD AKAKLLEIRS QQAKRMASRG DTKMEKKRKK KQKKLEEGQH GHALF
101: NFNSHKGAVT ALRYNKVGSM LASGSKDNDI ILWDVVGESG LFRLRGHRDQ VTDLVFLDGG KKLVSSSKDK FLRVWDLETQ HCMQIVSGHH SEVWSVDTDP
201: EERYVVTGSA DQELRFYAVK EYSSNGSLVS DSNANEIKAS EEHSTENKWE ILKLFGEIQR QTKDRVARVR FNVSGKLLAC QMAGKTIEIF RVLDEAEAKQ
301: KAKRRLRRKE KKSSKVGDEN STANGEASAK IELADAVSSP TVLDVFKLLQ VIRAGRKISS FSFCPTAPKE SLGTLALSLN NNSLEFYSLK SSENAKTVTI
401: EHQGHRSDVR SVTLSEDNTL LMSTSHSEVK IWNPSTGSCL RTIDSGYGLC SLIVPQNKYG IVGTKSGVLE IIDIGSATKV EEVKAHGGTI WSITPIPNDS
501: GFVTVSADHE VKFWEYQVKQ KSGKATKKLT VSNVKSMKMN DDVLAVAISP DAKHIAVALL DSTVKVFYMD SLKFYLSLYG HKLPVMCIDI SSDGELIVTG
601: SQDKNLKIWG LDFGDCHKSI FAHGDSVMGV KFVRNTHYLF SIGKDRLVKY WDADKFEHLL TLEGHHAEIW CLAISNRGDF LVTGSHDRSM RRWDRSEEPF
701: FLEEEKEKRL EELFESEIDN AADDRHGPME EIPEEGVAAL AGKKTIDVLS AADSIIDALE VAEDETKRHA AYEEEKTKGK VPEYLPNAVM FGLSPSEYVL
801: RAISNVRTND LEQTLLALPF SDSLKFLCYM KDWSLIPEKV ELVSRIATII LQTHHNQLVT TPSARPILSV LRDILYSEIK ACKDTIGFNL AAMDHVKQMM
901: DARSDAPFKD AKAKLLEIRS QQAKRMASRG DTKMEKKRKK KQKKLEEGQH GHALF
Arabidopsis Description
Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LVF2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.