Factsheet for GSMUA_Achr9P22400_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P11610_001
GSMUA_Achr4P14200_001
GSMUA_Achr7P10670_001
GSMUA_Achr7P11400_001
GSMUA_Achr7P26980_001
GSMUA_Achr9P09310_001
GSMUA_Achr9P22400_001
GSMUA_Achr9P22410_001
GSMUA_Achr9P26740_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25150.1	GSMUA_Achr7P10670_001	AT1G17440.1	17340043
AT5G25150.1	GSMUA_Achr4P14200_001	AT1G27720.1	17340043
AT5G25150.1	GSMUA_Achr2P11610_001	AT1G32750.1	17340043
AT5G25150.1	GSMUA_Achr10P...	AT1G54140.1	17340043
AT5G25150.1	GSMUA_Achr7P11400_001	AT1G54140.1	17340043
AT5G25150.1	GSMUA_Achr10P...	AT3G10070.1	17340043
AT5G25150.1	GSMUA_Achr11P...	AT4G34340.1	17340043
AT5G25150.1	GSMUA_Achr9P09310_001	AT4G34340.1	17340043
AT5G25150.1	GSMUA_Achr9P26740_001	AT4G34340.1	17340043
AT5G25150.1	GSMUA_Achr7P26980_001	AT5G25150.1	17340043
AT5G25150.1	GSMUA_Achr9P22400_001	AT5G25150.1	17340043
AT5G25150.1	GSMUA_Achr9P22410_001	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025112_P001	Maize	cytosol, nucleus, plastid	77.78	72.68
KRG99418	Soybean	cytosol, extracellular, plastid	33.92	66.67
Zm00001d044810_P001	Maize	nucleus	50.29	66.67
Zm00001d016330_P001	Maize	extracellular	50.29	59.31
KRH15679	Soybean	cytosol	39.18	52.76
Zm00001d053142_P001	Maize	nucleus	31.58	33.54
HORVU0Hr1G022460.1	Barley	nucleus	83.63	29.24
TraesCS7B01G416400.1	Wheat	nucleus	83.04	29.04
KXG20501	Sorghum	nucleus	84.21	21.92
TraesCS7A01G508300.2	Wheat	nucleus	83.63	21.8
TraesCS5D01G324200.2	Wheat	nucleus	83.63	21.8
HORVU7Hr1G113760.2	Barley	nucleus	83.63	21.8
Os06t0649500-01	Rice	nucleus	83.04	21.71
TraesCS7D01G496500.1	Wheat	nucleus	82.46	21.66
TraesCS5A01G317800.1	Wheat	nucleus	83.04	21.65
KRH52333	Soybean	nucleus	83.63	21.57
Zm00001d046810_P002	Maize	nucleus	84.8	21.55
KRH61671	Soybean	nucleus	84.21	21.52
TraesCS5B01G318400.1	Wheat	nucleus	82.46	21.49
VIT_04s0008g05780.t01	Wine grape	nucleus	84.8	21.45
KRH05348	Soybean	nucleus	81.87	21.28
Solyc06g065700.2.1	Tomato	nucleus	84.8	21.17
Bra020485.1-P	Field mustard	nucleus	80.12	20.57
CDY05473	Canola	nucleus	80.12	20.57
GSMUA_Achr6P34790_001	Banana	extracellular	18.71	20.51
CDY05378	Canola	nucleus	79.53	20.48
Bra036534.1-P	Field mustard	nucleus	79.53	20.36
CDX87098	Canola	nucleus	79.53	20.36
CDY19814	Canola	nucleus	79.53	20.36
AT5G25150.1	Thale cress	nucleus	79.53	20.33
GSMUA_Achr7P26980_001	Banana	nucleus	88.3	19.76
GSMUA_Achr2P01810_001	Banana	cytosol	23.98	12.77
GSMUA_Achr5P26190_001	Banana	cytosol	25.15	12.36
GSMUA_Achr11P...	Banana	nucleus	23.39	9.15
GSMUA_Achr11P...	Banana	mitochondrion	26.32	4.89
GSMUA_Achr11P...	Banana	cytosol, golgi, plastid	25.15	4.57
GSMUA_Achr6P34780_001	Banana	cytosol	9.36	3.41
GSMUA_Achr9P22410_001	Banana	cytosol	1.17	0.54

Protein Annotations

MapMan:15.3.4.3.1	MapMan:15.3.5.3.5	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr9G22400_001	EnsemblPlants:GSMUA_Achr9P22400_001	EnsemblPlants:GSMUA_Achr9T22400_001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:M0U2J9	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19879	PANTHER:PTHR19879:SF1	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000296D662
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

Putative Transcription initiation factor TFIID subunit 5 [Source:GMGC_GENE;Acc:GSMUA_Achr9G22400_001]

Coordinates

chr9:-:27490533..27493041

Molecular Weight (calculated)

18554.2 Da

IEP (calculated)

8.214

GRAVY (calculated)

-0.006

Length

171 amino acids

Sequence
(BLAST)

001: MAGHLSDVDC VQWHANCNYI ATGSSDKTVR LWDVQSGECV RIFIGHRSMI LSLAMSPDGR YMASGDEDGT IMMWDLSSGR CVSPLVGHSS CVWTLAFSCE
101: GTLLASGSAD CTIKLWDVTA STRASRMESK SSSSNRLRLL KALPTKSTPV YTLQFSRRNL LFAAGALSKC S

Best Arabidopsis Sequence Match ( AT5G25150.1 )
(BLAST)

001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN

Arabidopsis Description

TAF5Transcription initiation factor TFIID subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6S7B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.