Factsheet for GSMUA_Achr9P09310_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr4P14200_001
GSMUA_Achr7P10670_001
GSMUA_Achr7P26980_001
GSMUA_Achr9P09310_001
GSMUA_Achr9P22400_001
GSMUA_Achr9P22410_001
GSMUA_Achr9P26740_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34340.1	GSMUA_AchrUn_...	AT1G02680.1	17340043
AT4G34340.1	GSMUA_Achr7P10670_001	AT1G17440.1	17340043
AT4G34340.1	GSMUA_Achr4P14200_001	AT1G27720.1	17340043
AT4G34340.1	GSMUA_Achr10P...	AT3G10070.1	17340043
AT4G34340.1	GSMUA_Achr11P...	AT4G34340.1	17340043
AT4G34340.1	GSMUA_Achr9P09310_001	AT4G34340.1	17340043
AT4G34340.1	GSMUA_Achr9P26740_001	AT4G34340.1	17340043
AT4G34340.1	GSMUA_Achr7P26980_001	AT5G25150.1	17340043
AT4G34340.1	GSMUA_Achr9P22400_001	AT5G25150.1	17340043
AT4G34340.1	GSMUA_Achr9P22410_001	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P26740_001	Banana	nucleus	61.86	63.0
GSMUA_Achr11P...	Banana	nucleus	57.66	53.19
VIT_08s0040g01420.t01	Wine grape	cytosol, nucleus, plastid	48.65	44.02
VIT_14s0068g00340.t01	Wine grape	nucleus	46.55	41.11
EES17247	Sorghum	cytosol	42.64	38.59
Zm00001d041530_P001	Maize	cytosol	40.54	37.82
Zm00001d041766_P001	Maize	cytosol	41.44	37.3
KRH32528	Soybean	cytosol	39.64	37.08
KRH19914	Soybean	cytosol	39.34	37.01
Solyc09g008150.1.1	Tomato	nucleus	41.44	37.0
EES15849	Sorghum	cytosol	41.74	36.97
PGSC0003DMT400009911	Potato	nucleus	40.84	36.36
Os12t0574800-02	Rice	nucleus	39.94	36.34
TraesCS5A01G081700.1	Wheat	cytosol	39.04	35.91
TraesCS5B01G084700.1	Wheat	cytosol	39.04	35.91
TraesCS5D01G090900.1	Wheat	cytosol, nucleus, plastid	38.74	35.83
AT4G34340.1	Thale cress	nucleus	36.94	34.84
KRH01313	Soybean	cytosol	39.64	34.65
Os03t0603300-01	Rice	cytosol, plastid	28.53	34.05
CDX75423	Canola	nucleus	35.14	33.72
Bra011521.1-P	Field mustard	nucleus	34.83	33.53
KRH45059	Soybean	cytosol	37.84	33.07
CDY69783	Canola	nucleus	35.14	32.59
TraesCSU01G065200.1	Wheat	cytosol	33.63	31.55
TraesCS7A01G040600.1	Wheat	cytosol, mitochondrion	32.43	30.86
TraesCS7D01G036000.1	Wheat	mitochondrion	30.93	30.29
CDY43254	Canola	nucleus	26.13	24.17
AT5G15570.1	Thale cress	nucleus	27.33	23.88
AT3G02160.1	Thale cress	cytosol	27.63	23.17
Bra008690.1-P	Field mustard	nucleus	24.92	22.93
Bra023525.1-P	Field mustard	cytosol	25.83	22.81
HORVU7Hr1G006990.9	Barley	mitochondrion, plastid	26.43	22.39
Bra001033.1-P	Field mustard	cytosol	24.92	21.96
CDX74271	Canola	cytosol	24.62	21.87
Bra039159.1-P	Field mustard	nucleus	24.32	21.49
CDY60474	Canola	nucleus	24.02	21.22
CDX91978	Canola	cytosol, extracellular, nucleus	24.62	21.08

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.8	InterPro:BTP	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005669	GO:GO:0046982	EnsemblPlantsGene:GSMUA_Achr9G09310_001	EnsemblPlants:GSMUA_Achr9P09310_001	EnsemblPlants:GSMUA_Achr9T09310_001	InterPro:Histone-fold
InterPro:IPR009072	UniProt:M0TYU0	PFAM:PF07524	PFAM:PF10406	PANTHER:PTHR12321	PANTHER:PTHR12321:SF53
SMART:SM00576	SUPFAM:SSF47113	InterPro:TAF8	InterPro:TFIID_su8_C	UniParc:UPI00029600F3	SEG:seg

Description

Putative bromodomain associated family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G09310_001]

Coordinates

chr9:-:6089868..6091102

Molecular Weight (calculated)

36773.6 Da

IEP (calculated)

8.771

GRAVY (calculated)

-0.493

Length

333 amino acids

Sequence
(BLAST)

001: MSDGGRESGR NQRTTSKKSR LSSRGDEFSH AVAKIAVGQI CESVGFHGSN RTAINAMADI MVRYICDLGK SANFYANLAG RTSCNVFDII QGLEDLSSSR
101: GFSGASDVHH CLVGSGVVRE ITQFVTTEEV PFAQPISGYP VCTTPKPTPS FAQVGETSSG KHIPDWVPRL PDPRTYVRME EWNKGVTDTK MDKVEETRQR
201: TKAESSLLSL QQRLAYNNAD AGNRLCVLET SVPATESVKV GPVDLETNEK KVLPGRRPIV HFKLKVDKKS IAASFSSDAL DAKNDSWPLR HDEKDDKKRR
301: AEIILKEAME KPHDLAQLGL SMVKNLRYVT YVV

Best Arabidopsis Sequence Match ( AT4G34340.1 )
(BLAST)

001: MNTERAQEGD RNDAASSSGC SESYEFSHAA AKAAVAQVCE SVGYENFKDP ALESLSGFAL QYILQLGKTA TSFANLTGRS QCNVFDIILA LDDLTDNNGE
101: QGISSESCSL GRSIKLREII DFVNSSEEVP FSQPLPSFPV AISDRSRKMI PSFVEIGETP PGKHIPLWLP AFPDPHTYKE TPMWIERVSD PRGDKIEQAR
201: QRRKAERALL SLQRKLVCKI SSRNPVWGDM DGVKEEMRDD ESELRSVSSG EKVESLNRDG LSVIEAFAPA MEAARDGFSS EAHTEWKKNK PVALSKLRTE
301: KKFLGQPLDL SLQMKGEDRP ISFVREEDRD DKRRRAEFIL RQCMENPVDL NQL

Arabidopsis Description

TAF8Transcription initiation factor TFIID subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYZ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.