CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00711
EES03919
EES15849
EES17247
KXG20501
KXG31790
KXG33694
OQU92338

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34340.1	EES00711	AT1G02680.1	17340043
AT4G34340.1	KXG33694	AT1G17440.1	17340043
AT4G34340.1	KXG31790	AT1G27720.1	17340043
AT4G34340.1	OQU92338	AT1G27720.1	17340043
AT4G34340.1	EES03919	AT3G10070.1	17340043
AT4G34340.1	EES15849	AT4G34340.1	17340043
AT4G34340.1	EES17247	AT4G34340.1	17340043
AT4G34340.1	KXG20501	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041766_P001	Maize	cytosol	89.63	91.08
EES17247	Sorghum	cytosol	86.7	88.59
TraesCS5A01G081700.1	Wheat	cytosol	76.06	79.01
TraesCS5B01G084700.1	Wheat	cytosol	75.53	78.45
TraesCS5D01G090900.1	Wheat	cytosol, nucleus, plastid	75.0	78.33
Os12t0574800-02	Rice	nucleus	72.07	74.04
GSMUA_Achr9P26740_001	Banana	nucleus	41.49	47.71
GSMUA_Achr11P...	Banana	nucleus	42.29	44.04
VIT_08s0040g01420.t01	Wine grape	cytosol, nucleus, plastid	41.49	42.39
GSMUA_Achr9P09310_001	Banana	nucleus	36.97	41.74
Solyc09g008150.1.1	Tomato	nucleus	39.1	39.41
KRH19914	Soybean	cytosol	36.97	39.27
PGSC0003DMT400009911	Potato	nucleus	38.56	38.77
VIT_14s0068g00340.t01	Wine grape	nucleus	38.03	37.93
KRH32528	Soybean	cytosol	35.64	37.64
KRH01313	Soybean	cytosol	36.7	36.22
AT4G34340.1	Thale cress	nucleus	32.98	35.13
KRH45059	Soybean	cytosol	35.37	34.91
Bra011521.1-P	Field mustard	nucleus	30.32	32.95
CDX75423	Canola	nucleus	30.05	32.56
CDY69783	Canola	nucleus	30.85	32.31
EES07408	Sorghum	mitochondrion, plastid	19.41	29.55
Bra008690.1-P	Field mustard	nucleus	27.66	28.73
Bra023525.1-P	Field mustard	cytosol	28.46	28.38
AT5G15570.1	Thale cress	nucleus	27.66	27.3
Bra039159.1-P	Field mustard	nucleus	26.6	26.53
AT3G02160.1	Thale cress	cytosol	27.93	26.45
CDX74271	Canola	cytosol	26.06	26.13
CDY60474	Canola	nucleus	26.06	25.99
Bra001033.1-P	Field mustard	cytosol	25.8	25.66
CDY43254	Canola	nucleus	24.2	25.28
CDX91978	Canola	cytosol, extracellular, nucleus	25.53	24.68

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.8	EntrezGene:8084207	InterPro:BTP	UniProt:C5YTR9	EnsemblPlants:EES15849
ProteinID:EES15849	ProteinID:EES15849.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046982
InterPro:Histone-fold	InterPro:IPR009072	PFAM:PF07524	PFAM:PF10406	PANTHER:PTHR12321	PANTHER:PTHR12321:SF45
SMART:SM00576	EnsemblPlantsGene:SORBI_3008G077700	InterPro:TFIID_su8_C	UniParc:UPI0001A880E6	RefSeq:XP_002442011.1	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:12064807..12068986

Molecular Weight (calculated)

40572.3 Da

IEP (calculated)

8.687

GRAVY (calculated)

-0.393

Length

376 amino acids

Sequence
(BLAST)

001: MSGWKAGGRR SSGDMNRDGG GGGSGSGDEF GRAVARAAVA QALEAAGFDC AHRSAVDAVV DIVLRYITHL GRSAAFHANL AGRALANELD VIQALEEVGA
101: DTDGFAGAAT TGHCLVGSGV VKDLLAFVYS KDEVPFARPL PRFPIQRAEP QPSASFAVTG RETGMRHVPE WLPAFPDPHT YVRTEVWVEP PATKDRVDKV
201: EQVRQRRKAE KSLLSLQRRL AMAGADGFRP AVAVAQDSAE KGKEIQAAGT KRNPFLEPAL LPGEKDVSEV DLPPEKKKLS VLEAFAPAIQ VRTIREIDAG
301: AGLDQNQRSI VPKERAPVHL KIGFSKKPLE AALNSRALDL REDPSFLKEE AKDDKKRRAG MILRASMENP QELPQL

Best Arabidopsis Sequence Match ( AT4G34340.1 )
(BLAST)

001: MNTERAQEGD RNDAASSSGC SESYEFSHAA AKAAVAQVCE SVGYENFKDP ALESLSGFAL QYILQLGKTA TSFANLTGRS QCNVFDIILA LDDLTDNNGE
101: QGISSESCSL GRSIKLREII DFVNSSEEVP FSQPLPSFPV AISDRSRKMI PSFVEIGETP PGKHIPLWLP AFPDPHTYKE TPMWIERVSD PRGDKIEQAR
201: QRRKAERALL SLQRKLVCKI SSRNPVWGDM DGVKEEMRDD ESELRSVSSG EKVESLNRDG LSVIEAFAPA MEAARDGFSS EAHTEWKKNK PVALSKLRTE
301: KKFLGQPLDL SLQMKGEDRP ISFVREEDRD DKRRRAEFIL RQCMENPVDL NQL

Arabidopsis Description

TAF8Transcription initiation factor TFIID subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYZ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.