Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011521.1-P | Field mustard | nucleus | 65.16 | 66.47 |
| CDX75423 | Canola | nucleus | 64.87 | 65.99 |
| CDY69783 | Canola | nucleus | 63.74 | 62.67 |
| VIT_08s0040g01420.t01 | Wine grape | cytosol, nucleus, plastid | 44.48 | 42.66 |
| GSMUA_Achr9P26740_001 | Banana | nucleus | 37.96 | 40.98 |
| PGSC0003DMT400009911 | Potato | nucleus | 43.06 | 40.64 |
| Solyc09g008150.1.1 | Tomato | nucleus | 42.78 | 40.48 |
| KRH19914 | Soybean | cytosol | 39.66 | 39.55 |
| KRH32528 | Soybean | cytosol | 37.96 | 37.64 |
| GSMUA_Achr9P09310_001 | Banana | nucleus | 34.84 | 36.94 |
| Os12t0574800-02 | Rice | nucleus | 36.54 | 35.25 |
| GSMUA_Achr11P... | Banana | nucleus | 35.98 | 35.18 |
| EES17247 | Sorghum | cytosol | 35.41 | 33.97 |
| Zm00001d041530_P001 | Maize | cytosol | 34.28 | 33.89 |
| TraesCS5D01G090900.1 | Wheat | cytosol, nucleus, plastid | 33.99 | 33.33 |
| EES15849 | Sorghum | cytosol | 35.13 | 32.98 |
| TraesCS5B01G084700.1 | Wheat | cytosol | 33.71 | 32.87 |
| TraesCS5A01G081700.1 | Wheat | cytosol | 33.71 | 32.87 |
| Zm00001d041766_P001 | Maize | cytosol | 34.28 | 32.7 |
| Os03t0603300-01 | Rice | cytosol, plastid | 24.93 | 31.54 |
| TraesCS7D01G036000.1 | Wheat | mitochondrion | 26.63 | 27.65 |
| TraesCS7A01G040600.1 | Wheat | cytosol, mitochondrion | 26.91 | 27.14 |
| TraesCSU01G065200.1 | Wheat | cytosol | 27.2 | 27.04 |
| AT5G15570.1 | Thale cress | nucleus | 25.5 | 23.62 |
| AT1G31240.1 | Thale cress | nucleus | 18.13 | 23.1 |
| AT3G02160.1 | Thale cress | cytosol | 25.21 | 22.42 |
| HORVU7Hr1G006990.9 | Barley | mitochondrion, plastid | 23.23 | 20.87 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.5.3.8 | EntrezGene:829584 | ProteinID:AEE86361.1 | EMBL:AF360178 | ArrayExpress:AT4G34340 |
| EnsemblPlantsGene:AT4G34340 | RefSeq:AT4G34340 | TAIR:AT4G34340 | RefSeq:AT4G34340-TAIR-G | EnsemblPlants:AT4G34340.1 | TAIR:AT4G34340.1 |
| EMBL:AY039994 | EMBL:AY084690 | EMBL:AY463623 | Unigene:At.2617 | InterPro:BTP | ProteinID:CAB36711.1 |
| ProteinID:CAB80151.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005669 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | RefSeq:NP_567964.1 | PFAM:PF07524 | PFAM:PF10406 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009049 |
| PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF53 | UniProt:Q9SYZ9 | SMART:SM00576 | SUPFAM:SSF47113 | InterPro:TAF8 |
| Symbol:TAF8 | InterPro:TFIID_su8_C | UniParc:UPI00000A6E80 | SEG:seg | : | : |
Description
TAF8Transcription initiation factor TFIID subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYZ9]
Coordinates
chr4:-:16426639..16428010
Molecular Weight (calculated)
39548.6 Da
IEP (calculated)
4.958
GRAVY (calculated)
-0.602
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTERAQEGD RNDAASSSGC SESYEFSHAA AKAAVAQVCE SVGYENFKDP ALESLSGFAL QYILQLGKTA TSFANLTGRS QCNVFDIILA LDDLTDNNGE
101: QGISSESCSL GRSIKLREII DFVNSSEEVP FSQPLPSFPV AISDRSRKMI PSFVEIGETP PGKHIPLWLP AFPDPHTYKE TPMWIERVSD PRGDKIEQAR
201: QRRKAERALL SLQRKLVCKI SSRNPVWGDM DGVKEEMRDD ESELRSVSSG EKVESLNRDG LSVIEAFAPA MEAARDGFSS EAHTEWKKNK PVALSKLRTE
301: KKFLGQPLDL SLQMKGEDRP ISFVREEDRD DKRRRAEFIL RQCMENPVDL NQL
101: QGISSESCSL GRSIKLREII DFVNSSEEVP FSQPLPSFPV AISDRSRKMI PSFVEIGETP PGKHIPLWLP AFPDPHTYKE TPMWIERVSD PRGDKIEQAR
201: QRRKAERALL SLQRKLVCKI SSRNPVWGDM DGVKEEMRDD ESELRSVSSG EKVESLNRDG LSVIEAFAPA MEAARDGFSS EAHTEWKKNK PVALSKLRTE
301: KKFLGQPLDL SLQMKGEDRP ISFVREEDRD DKRRRAEFIL RQCMENPVDL NQL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.