Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G065200.1 | Wheat | cytosol | 91.71 | 90.42 |
| TraesCS7D01G036000.1 | Wheat | mitochondrion | 87.43 | 90.0 |
| TraesCS5A01G081700.1 | Wheat | cytosol | 54.57 | 52.76 |
| Os03t0603300-01 | Rice | cytosol, plastid | 41.43 | 51.97 |
| HORVU7Hr1G006990.9 | Barley | mitochondrion, plastid | 57.43 | 51.15 |
| GSMUA_Achr9P26740_001 | Banana | nucleus | 34.29 | 36.7 |
| GSMUA_Achr11P... | Banana | nucleus | 36.86 | 35.73 |
| KRH19914 | Soybean | cytosol | 33.14 | 32.77 |
| VIT_08s0040g01420.t01 | Wine grape | cytosol, nucleus, plastid | 34.29 | 32.61 |
| GSMUA_Achr9P09310_001 | Banana | nucleus | 30.86 | 32.43 |
| KRH32528 | Soybean | cytosol | 32.86 | 32.3 |
| VIT_14s0068g00340.t01 | Wine grape | nucleus | 33.14 | 30.77 |
| Solyc09g008150.1.1 | Tomato | nucleus | 32.0 | 30.03 |
| PGSC0003DMT400009911 | Potato | nucleus | 30.86 | 28.88 |
| KRH01313 | Soybean | cytosol | 31.43 | 28.87 |
| KRH45059 | Soybean | cytosol | 30.0 | 27.56 |
| AT4G34340.1 | Thale cress | nucleus | 27.14 | 26.91 |
| CDX75423 | Canola | nucleus | 26.29 | 26.51 |
| Bra011521.1-P | Field mustard | nucleus | 26.0 | 26.3 |
| Bra008690.1-P | Field mustard | nucleus | 27.14 | 26.24 |
| Bra039159.1-P | Field mustard | nucleus | 27.71 | 25.73 |
| Bra023525.1-P | Field mustard | cytosol | 27.43 | 25.46 |
| CDY60474 | Canola | nucleus | 27.14 | 25.2 |
| CDY69783 | Canola | nucleus | 25.43 | 24.79 |
| CDY43254 | Canola | nucleus | 25.43 | 24.72 |
| AT3G02160.1 | Thale cress | cytosol | 27.71 | 24.43 |
| AT5G15570.1 | Thale cress | nucleus | 25.71 | 23.62 |
| CDX74271 | Canola | cytosol | 24.29 | 22.67 |
| Bra001033.1-P | Field mustard | cytosol | 24.29 | 22.49 |
| CDX91978 | Canola | cytosol, extracellular, nucleus | 24.86 | 22.36 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G040600.1 | EnsemblPlantsGene:TraesCS7A01G040600 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046982 | InterPro:BTP | InterPro:Histone-fold | InterPro:IPR009072 | InterPro:TFIID_su8_C | PANTHER:PTHR12321 |
| PANTHER:PTHR12321:SF45 | PFAM:PF07524 | PFAM:PF10406 | SEG:seg | SMART:SM00576 | TIGR:cd08049 |
| MapMan:15.3.5.3.8 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7A:-:18874137..18875189
Molecular Weight (calculated)
37581.8 Da
IEP (calculated)
9.213
GRAVY (calculated)
-0.417
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGGADEFG RAAARAAVAR TLQAAGFASA TRSAVDALAD VLLRYLRLLG GAANAHANHA GRSAPNELDV LQFLGETGEA YQGFEGASST RGCLVGSGVV
101: KDLVAFAGDA DDKPLSVRRP LPRFPVRHDP PPSRSCVSFA ALGRGSGMRH VPEWLPAFPE PHTYAMAEES GEMVGGSSAV VDEVEQVRRQ RKAEKSLLGL
201: QRQLALAGGN GIRPAMVVEE GAGKGKELDR AVVKSNPFIQ SALRCGEKEV PEVAMPNLGK KHPVLDAFAP AFAESEGERL DEGRRDQGRC RKRIVPKERP
301: PVYFRIGTDR KSRVMALNSR ALEDREGPLF LEDDRKRRAL SIAEPMEKPS
101: KDLVAFAGDA DDKPLSVRRP LPRFPVRHDP PPSRSCVSFA ALGRGSGMRH VPEWLPAFPE PHTYAMAEES GEMVGGSSAV VDEVEQVRRQ RKAEKSLLGL
201: QRQLALAGGN GIRPAMVVEE GAGKGKELDR AVVKSNPFIQ SALRCGEKEV PEVAMPNLGK KHPVLDAFAP AFAESEGERL DEGRRDQGRC RKRIVPKERP
301: PVYFRIGTDR KSRVMALNSR ALEDREGPLF LEDDRKRRAL SIAEPMEKPS
001: MVLHVMLGEV VTKFLNMNNG VGEGGSQQRE LHGKRKLFRG NDFAFSIARM AVAQICESVE VNPYQESQTR EGVRFSSFQE SALDTLTDVA VQYIQSIGKT
101: AHLYANLAGR VDGNSLDILQ ALEDLGSGLG FAGVSDTDHC LADSGVVKDI IRYTGEAEEI PFVYSLPRFP FSKEKKPAPS FSEVGAEPPD EHIPVWLPAF
201: PETELCDRSE ETNAATIEGE IPSKENGSSL PSMQLSFDGG GRLEIHKSSK DVGESTEAVV EGNLFLTAPL RFVEKNVSPV VRPLELSNEV VRTNHVPDKH
301: VRNNHHIPIL EASAPSDKIN NKNWLAISKD VEKVDVARKE LTLVRFKIGT TKRSMCLAKN RSFQEEGWFQ EGEDKREKTS EIKEKRERID SQLSTQM
101: AHLYANLAGR VDGNSLDILQ ALEDLGSGLG FAGVSDTDHC LADSGVVKDI IRYTGEAEEI PFVYSLPRFP FSKEKKPAPS FSEVGAEPPD EHIPVWLPAF
201: PETELCDRSE ETNAATIEGE IPSKENGSSL PSMQLSFDGG GRLEIHKSSK DVGESTEAVV EGNLFLTAPL RFVEKNVSPV VRPLELSNEV VRTNHVPDKH
301: VRNNHHIPIL EASAPSDKIN NKNWLAISKD VEKVDVARKE LTLVRFKIGT TKRSMCLAKN RSFQEEGWFQ EGEDKREKTS EIKEKRERID SQLSTQM
Arabidopsis Description
At3g02160 [Source:UniProtKB/TrEMBL;Acc:Q9S7R9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.