Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G150300.3 | Wheat | nucleus | 97.01 | 95.64 |
| TraesCS4D01G160000.1 | Wheat | nucleus | 96.54 | 95.51 |
| HORVU4Hr1G034590.13 | Barley | cytosol, nucleus | 89.49 | 86.19 |
| Os03t0441000-01 | Rice | nucleus | 68.58 | 70.09 |
| OQU92338 | Sorghum | nucleus | 67.98 | 63.15 |
| CDX71498 | Canola | cytosol | 7.53 | 59.43 |
| Zm00001d029598_P003 | Maize | nucleus | 65.71 | 59.27 |
| CDX71499 | Canola | nucleus | 7.53 | 39.62 |
| CDY58727 | Canola | peroxisome | 4.66 | 39.39 |
| GSMUA_Achr4P03380_001 | Banana | nucleus | 40.5 | 38.61 |
| Bra033662.1-P | Field mustard | nucleus | 34.89 | 37.87 |
| CDY22365 | Canola | nucleus | 34.77 | 37.6 |
| CDY46486 | Canola | nucleus, plastid | 3.94 | 37.5 |
| Bra035961.1-P | Field mustard | nucleus | 34.05 | 36.59 |
| CDY25235 | Canola | nucleus | 34.05 | 36.21 |
| VIT_18s0001g09310.t01 | Wine grape | nucleus | 39.78 | 35.96 |
| CDY30789 | Canola | mitochondrion | 34.77 | 35.75 |
| TraesCS6A01G242900.1 | Wheat | nucleus | 33.81 | 35.55 |
| Solyc04g078050.2.1 | Tomato | nucleus | 39.55 | 35.44 |
| GSMUA_Achr4P14210_001 | Banana | nucleus | 35.24 | 35.08 |
| AT5G43130.2 | Thale cress | nucleus | 34.53 | 33.92 |
| KRH61389 | Soybean | nucleus | 36.68 | 33.55 |
| KRH15434 | Soybean | nucleus | 36.68 | 32.83 |
| CDY68956 | Canola | nucleus | 21.27 | 32.36 |
| KRH52077 | Soybean | nucleus | 35.96 | 32.26 |
| KRH05606 | Soybean | mitochondrion | 36.56 | 31.35 |
| AT1G27720.1 | Thale cress | nucleus | 26.16 | 30.42 |
| CDY60273 | Canola | nucleus | 25.57 | 29.8 |
| CDY03944 | Canola | nucleus | 26.05 | 25.65 |
| Bra030061.1-P | Field mustard | mitochondrion, nucleus | 24.37 | 25.4 |
| PGSC0003DMT400055395 | Potato | nucleus | 15.41 | 22.01 |
Protein Annotations
| MapMan:15.3.5.3.4 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005669 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | PFAM:PF05236 | PFAM:PF12174 | PANTHER:PTHR15138 | PANTHER:PTHR15138:SF16 |
| InterPro:RST | InterPro:TAF4 | EnsemblPlantsGene:TraesCS4A01G163100 | EnsemblPlants:TraesCS4A01G163100.1 | TIGR:cd08045 | SEG:seg |
Description
No Description!
Coordinates
chr4A:+:363080324..363122005
Molecular Weight (calculated)
91639.8 Da
IEP (calculated)
10.087
GRAVY (calculated)
-0.856
Length
837 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPIMKLLED DEEDESMHSG ADVEAFTAAL NREVEGSASS SSSAAAAFSF QPLDHAAGTL PQKSNPVVNN SHGQWQGSVK NDSGNQESQQ QEEKHLYCKK
101: EQSSGPEAVP IGADNKQLHS NTQIECFQLK VKREPGNNAQ QSTVGQQQPM QQIKSQQPPG TNQTNSSPAM VGKPPVVTFH MLIPILRRYL DKDRDIQVQS
201: IFAKLRKNEV SKEHFLKVIR TIVGDKLLKQ AASQYQMQAA QAQRNQVPGQ QNESPRPPQF RLSSSGQMQN NMGYAASEGN LQKPNETGNM SDRKGLQMLH
301: SRPPNIHSIP LQATQDHVQR PQTFLPALGA NNIHSRQFPQ SVGGPIAPLR PQMTDSSQRG QSVQRGVASV LGSVATRPAL QNNQPSQQQP NKEQKTNSFT
401: PTVHMNKDNA NQPSESAQSS FAALNAKQVN PGLLSSKVGG VLENQSSTLA TPKSLTTTSS SQPHPSYGTP AELNMQIQPS TQAPPSGAAS KTPQKKPSAG
501: QKKPLEAIGS SPPPSGKKQK GSGGFHDQSI DQLNDVTAVS GVNLREEEEQ LFSAPKEESR VSEAARKVVQ LEEERLILQK GPLTKKLAEI MRKYNLKSIG
601: CDVERCLSMC VEERLRGFIS NTIRLSKQRV DVEKSRHHYY PLSSDVRSHI LRVNREAREQ WDRKLAADAN RIRKQSDGDD NSVVSSEKDK AESRGTSKHA
701: KTYKEEDDKM RTTAANAAVR VAAGGDDMLS KWQLLAEKNK LRGEGGDGSS DSLPGTMSPH KLSPKAGKGS REQQEIEKRG YFSMLGPGGV RRSAHMKVAR
801: SIMVKDVVAA LEREHQMSKS SLLFRLHGSQ LTEPASK
101: EQSSGPEAVP IGADNKQLHS NTQIECFQLK VKREPGNNAQ QSTVGQQQPM QQIKSQQPPG TNQTNSSPAM VGKPPVVTFH MLIPILRRYL DKDRDIQVQS
201: IFAKLRKNEV SKEHFLKVIR TIVGDKLLKQ AASQYQMQAA QAQRNQVPGQ QNESPRPPQF RLSSSGQMQN NMGYAASEGN LQKPNETGNM SDRKGLQMLH
301: SRPPNIHSIP LQATQDHVQR PQTFLPALGA NNIHSRQFPQ SVGGPIAPLR PQMTDSSQRG QSVQRGVASV LGSVATRPAL QNNQPSQQQP NKEQKTNSFT
401: PTVHMNKDNA NQPSESAQSS FAALNAKQVN PGLLSSKVGG VLENQSSTLA TPKSLTTTSS SQPHPSYGTP AELNMQIQPS TQAPPSGAAS KTPQKKPSAG
501: QKKPLEAIGS SPPPSGKKQK GSGGFHDQSI DQLNDVTAVS GVNLREEEEQ LFSAPKEESR VSEAARKVVQ LEEERLILQK GPLTKKLAEI MRKYNLKSIG
601: CDVERCLSMC VEERLRGFIS NTIRLSKQRV DVEKSRHHYY PLSSDVRSHI LRVNREAREQ WDRKLAADAN RIRKQSDGDD NSVVSSEKDK AESRGTSKHA
701: KTYKEEDDKM RTTAANAAVR VAAGGDDMLS KWQLLAEKNK LRGEGGDGSS DSLPGTMSPH KLSPKAGKGS REQQEIEKRG YFSMLGPGGV RRSAHMKVAR
801: SIMVKDVVAA LEREHQMSKS SLLFRLHGSQ LTEPASK
001: MKLQKMSSKE TPWVEKTVDP VNHNLRLARV TDLLRTVVDH QPGKKTHCLN LHYKLKRKEL TMEEFMRQLR DLVGDQIIRS VISQLPQLKP GNMGIKVPGR
101: SNHDKVSKSA EFTAQESDPR EVHVNQLSST TSGTLNSSTT VQGLNKHPEQ HMQLPSSSFH MDTKSGSLNP YPGTNVTSPG SSSRAKLPDF QHRENNQNVG
201: IASVGGPTKS TINMTTVPKF ERPTFVNGPS RVQDGPISDF PKNSSFPLYS APWQGSVTKD HTVGPSSSVI HVEHKLIDQS FEQAHKPRYL VQQGVTNVPL
301: KQKNAIPISS NDDLEKQSSK MGLFTSTTSA SSVFPSMTTQ LDSSTMVNMP APSETIPKIA NVTVTPKMPS VGQKKPLEAL GSSLPPSRKK QKICGTSSDE
401: SIEKFNDVTA VSGINLREEE KQLLDSGPKK NDRVSKAYRR LVHGEEERTL LQKIPLQRKL TEIMGKSGLK HIDHDVERCL SLCVEERMRG LLFNIIRISK
501: QRTDAEKCRN RTFITSDIRK EINEMNQKVK EEWEKKHSGE EKNKENDTEK EDQRSNEVKA NKKDEDKERA KAANVAVRAA VGGDDRFSKW KLMAEARQRS
601: SPGPGRNSKK LSGGTQFGKN QGLPKVVRSI SVKDVIAVVE KEPQMSRSTL LYRVYNRICS DV
101: SNHDKVSKSA EFTAQESDPR EVHVNQLSST TSGTLNSSTT VQGLNKHPEQ HMQLPSSSFH MDTKSGSLNP YPGTNVTSPG SSSRAKLPDF QHRENNQNVG
201: IASVGGPTKS TINMTTVPKF ERPTFVNGPS RVQDGPISDF PKNSSFPLYS APWQGSVTKD HTVGPSSSVI HVEHKLIDQS FEQAHKPRYL VQQGVTNVPL
301: KQKNAIPISS NDDLEKQSSK MGLFTSTTSA SSVFPSMTTQ LDSSTMVNMP APSETIPKIA NVTVTPKMPS VGQKKPLEAL GSSLPPSRKK QKICGTSSDE
401: SIEKFNDVTA VSGINLREEE KQLLDSGPKK NDRVSKAYRR LVHGEEERTL LQKIPLQRKL TEIMGKSGLK HIDHDVERCL SLCVEERMRG LLFNIIRISK
501: QRTDAEKCRN RTFITSDIRK EINEMNQKVK EEWEKKHSGE EKNKENDTEK EDQRSNEVKA NKKDEDKERA KAANVAVRAA VGGDDRFSKW KLMAEARQRS
601: SPGPGRNSKK LSGGTQFGKN QGLPKVVRSI SVKDVIAVVE KEPQMSRSTL LYRVYNRICS DV
Arabidopsis Description
TAF4Transcription initiation factor TFIID subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6SJR1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.