CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035961.1-P	Field mustard	nucleus	99.27	70.09
CDY25235	Canola	nucleus	94.0	65.69
CDX71497	Canola	plastid	10.18	54.9
AT5G43130.2	Thale cress	nucleus	79.27	51.17
CDY22365	Canola	nucleus	71.82	51.03
CDY30789	Canola	mitochondrion	73.27	49.51
GSMUA_Achr4P14200_001	Banana	cytosol	5.82	47.06
CDY58727	Canola	peroxisome	8.36	46.46
CDX71498	Canola	cytosol	7.45	38.68
Zm00001d039731_P002	Maize	nucleus	22.18	23.19
CDY60273	Canola	nucleus	29.82	22.84
TraesCS4A01G163100.1	Wheat	nucleus	32.36	21.27
Os03t0441000-01	Rice	nucleus	31.64	21.25
TraesCS4B01G150300.3	Wheat	nucleus	32.55	21.08
TraesCS4D01G160000.1	Wheat	nucleus	32.18	20.92
CDY03944	Canola	nucleus	32.0	20.71
HORVU4Hr1G034590.13	Barley	cytosol, nucleus	32.36	20.48
OQU92338	Sorghum	nucleus	31.45	19.2
KXG31790	Sorghum	nucleus	24.0	17.89
Zm00001d029598_P003	Maize	nucleus	29.45	17.46
Os02t0654400-01	Rice	nucleus	21.82	16.48
Zm00001d039729_P004	Maize	nucleus	23.09	16.43
TraesCS6B01G281300.1	Wheat	nucleus	23.64	16.35
TraesCS6A01G242900.1	Wheat	nucleus	23.45	16.21
HORVU6Hr1G062340.1	Barley	nucleus	23.09	16.04
TraesCS6D01G225200.2	Wheat	endoplasmic reticulum, nucleus, peroxisome, plastid	23.82	15.63
CDY46486	Canola	nucleus, plastid	0.0	0.0
CDX71499	Canola	nucleus	0.0	0.0

Protein Annotations

MapMan:15.3.5.3.4	GO:A0A078JTJ2	UniProt:A0A078JTJ2	EnsemblPlants:CDY68956	ProteinID:CDY68956	ProteinID:CDY68956.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669
GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00081481001	PFAM:PF05236	PFAM:PF12174	PANTHER:PTHR15138	PANTHER:PTHR15138:SF14	InterPro:RST
InterPro:TAF4	UniParc:UPI0004EE904B	SEG:seg	:	:	:

Description

BnaA02g36640DBnaA02g36640D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JTJ2]

Coordinates

chrLK038335:-:3..2779

Molecular Weight (calculated)

60041.3 Da

IEP (calculated)

7.736

GRAVY (calculated)

-0.880

Length

550 amino acids

Sequence
(BLAST)

001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSTNP PGNTHSPNQQ FTATWKNGIG DASMKDQHGS ALDGQHQHDL KRANEPQDLH RPGQHWDNPP
101: QVPQTSGLQI SEKNPTGNEP ESESQFLKLQ KMTSQQARGV EQPPVNPLNR NPKQVPFAAL LPTLMAQLDK DRALQLRTLY SRLKKNEIPK EGFTRHMKDI
201: VGDQMLRLAV SKLQQVGYNQ GKMGIQAPST EINNQKSQSD PRGVVHLNQL SSSTGSSVPV QGLTKHPPHQ MQLPPSSFPM YTSSGNFHSF PGSNTNVSGS
301: PLRPHLHDPH MRHVAHNQTM GSSGLGGPPQ STTNMMTMPK FERQTSVNDP SRVQGGATSH FQNSSSLPPG QGSSMSNVKQ ESVDQSFEQK NAASGASKED
401: LEKDSSRNMS HASSVSPSSI TTQLDASTAM NSRGPLGTSQ AGVNARMPPK KPFVGQKKPL ETLGSSSSPP SKKQKLVPNS MDQSIEQLND VTAVSGVNLR
501: EEEEQLFSGG KEDGRVSEAS RRVVHEEEER LILQKIPLQK KLAEIKTLHI

Best Arabidopsis Sequence Match ( AT5G43130.1 )
(BLAST)

001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ

Arabidopsis Description

TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.