Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d029598_P003 | Maize | nucleus | 89.57 | 86.96 |
| Os03t0441000-01 | Rice | nucleus | 63.15 | 69.47 |
| TraesCS4B01G150300.3 | Wheat | nucleus | 64.59 | 68.55 |
| TraesCS4D01G160000.1 | Wheat | nucleus | 63.93 | 68.09 |
| TraesCS4A01G163100.1 | Wheat | nucleus | 63.15 | 67.98 |
| HORVU4Hr1G034590.13 | Barley | cytosol, nucleus | 65.37 | 67.78 |
| CDX71498 | Canola | cytosol | 6.55 | 55.66 |
| CDX71499 | Canola | nucleus | 7.77 | 44.03 |
| GSMUA_Achr4P03380_001 | Banana | nucleus | 39.84 | 40.89 |
| Bra033662.1-P | Field mustard | nucleus | 33.41 | 39.04 |
| CDY22365 | Canola | nucleus | 33.52 | 39.02 |
| CDY46486 | Canola | nucleus, plastid | 3.77 | 38.64 |
| CDY58727 | Canola | peroxisome | 4.22 | 38.38 |
| GSMUA_Achr4P14210_001 | Banana | nucleus | 34.74 | 37.22 |
| KXG31790 | Sorghum | nucleus | 30.41 | 37.13 |
| CDY25235 | Canola | nucleus | 32.41 | 37.1 |
| Bra035961.1-P | Field mustard | nucleus | 32.08 | 37.1 |
| CDY30789 | Canola | mitochondrion | 33.41 | 36.98 |
| VIT_18s0001g09310.t01 | Wine grape | nucleus | 37.62 | 36.61 |
| Solyc04g078050.2.1 | Tomato | nucleus | 37.51 | 36.19 |
| KRH61389 | Soybean | nucleus | 35.74 | 35.19 |
| AT5G43130.2 | Thale cress | nucleus | 33.07 | 34.98 |
| KRH15434 | Soybean | nucleus | 35.63 | 34.33 |
| KRH52077 | Soybean | nucleus | 34.96 | 33.76 |
| KRH05606 | Soybean | mitochondrion | 35.18 | 32.48 |
| CDY68956 | Canola | nucleus | 19.2 | 31.45 |
| AT1G27720.1 | Thale cress | nucleus | 23.97 | 30.0 |
| CDY60273 | Canola | nucleus | 23.2 | 29.11 |
| CDY03944 | Canola | nucleus | 24.2 | 25.65 |
| Bra030061.1-P | Field mustard | mitochondrion, nucleus | 21.86 | 24.53 |
| PGSC0003DMT400055395 | Potato | nucleus | 14.43 | 22.18 |
Protein Annotations
| MapMan:15.3.5.3.4 | UniProt:A0A1Z5S8U8 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005669 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlants:OQU92338 | ProteinID:OQU92338 | ProteinID:OQU92338.1 | PFAM:PF05236 |
| PFAM:PF12174 | PANTHER:PTHR15138 | PANTHER:PTHR15138:SF16 | InterPro:RST | EnsemblPlantsGene:SORBI_3001G329001 | InterPro:TAF4 |
| UniParc:UPI000B4245B7 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:61653475..61667440
Molecular Weight (calculated)
98418.4 Da
IEP (calculated)
10.072
GRAVY (calculated)
-0.863
Length
901 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPIMKLLED DEDESLHSGA DVEAFTAALN REVEASASAS ASTSTSTSVP AGSSCSSSQH TDHGSGLLPQ EHKSLLNHGH GQWQDPVKNE IVNQESQQQE
101: QTHALRNDQP SRPEMVSQGS NNNPLTTNTP KECDLLKAKQ EPGTTSQQGT VAQQQPMQQM KSEQTPIITQ QQSMQQMKSQ QTPGTNQTNS ATTTAKAPVV
201: TFHMLIPILR RYLDKDRDMQ VQSIFAKLRK NEVSKEHFLK VVRNIVGDKL LKQAASQYQM QHTAQAQRSA QTNPSNYSLS GQVSGQQTVP SGSMTGDEQK
301: GYPGAHTTPM KQAIDSTRPP QFRPSSSGQM QSNTGYPPSQ TNLHKPNEMG NMSDGKGVHM LQSRPPNNSI PVQTMQHHVQ RPQTSSPVFG ANSIHARPFP
401: RPVGGPAAPF RPQMADSNPR AQLVQGAVAT VAGSVPTRSI VSGNVPSNQS TRQQSANKEQ KTNSFAPSVH MNKETVSQNS ESSQNSFAAM HAKQVNQALG
501: SSKVGAGTES QSPQLSAPKP LTTTSLSQTQ SHGIQEEAKI QIQSSVQAPP AAASKTPQRK ATSGQKKPLE ALGSSPPPSS KKQKVSGGFH EQSIDQLNDV
601: TAVSGVNLRE EEEQLFSGPK EESRVSEAAR KVVQLEEEKL ILRKGPLTQK LAVIMSKCNL KVIGTDVERC LSMCVEERLR GFISSIIRFS KQRVDVEKSR
701: HRFYPLSSDV RSHIMRVNRE AREQWEKKQA EDAERIRKQN DGDGNANVDL EKDKNETRGL SKHAKTYKED DDKMRTTAAN VAARVAAGGD DMLSKWQLLA
801: ERNKQRSEGG DGSSGSIPGN MLQHRPSLKS GKDSREEQEV EKRGYSTMLG SGGVRRSSLT KVVRSVSIKD VVAALEREPQ MSKSSLLFRL YGRPLTEPSA
901: K
101: QTHALRNDQP SRPEMVSQGS NNNPLTTNTP KECDLLKAKQ EPGTTSQQGT VAQQQPMQQM KSEQTPIITQ QQSMQQMKSQ QTPGTNQTNS ATTTAKAPVV
201: TFHMLIPILR RYLDKDRDMQ VQSIFAKLRK NEVSKEHFLK VVRNIVGDKL LKQAASQYQM QHTAQAQRSA QTNPSNYSLS GQVSGQQTVP SGSMTGDEQK
301: GYPGAHTTPM KQAIDSTRPP QFRPSSSGQM QSNTGYPPSQ TNLHKPNEMG NMSDGKGVHM LQSRPPNNSI PVQTMQHHVQ RPQTSSPVFG ANSIHARPFP
401: RPVGGPAAPF RPQMADSNPR AQLVQGAVAT VAGSVPTRSI VSGNVPSNQS TRQQSANKEQ KTNSFAPSVH MNKETVSQNS ESSQNSFAAM HAKQVNQALG
501: SSKVGAGTES QSPQLSAPKP LTTTSLSQTQ SHGIQEEAKI QIQSSVQAPP AAASKTPQRK ATSGQKKPLE ALGSSPPPSS KKQKVSGGFH EQSIDQLNDV
601: TAVSGVNLRE EEEQLFSGPK EESRVSEAAR KVVQLEEEKL ILRKGPLTQK LAVIMSKCNL KVIGTDVERC LSMCVEERLR GFISSIIRFS KQRVDVEKSR
701: HRFYPLSSDV RSHIMRVNRE AREQWEKKQA EDAERIRKQN DGDGNANVDL EKDKNETRGL SKHAKTYKED DDKMRTTAAN VAARVAAGGD DMLSKWQLLA
801: ERNKQRSEGG DGSSGSIPGN MLQHRPSLKS GKDSREEQEV EKRGYSTMLG SGGVRRSSLT KVVRSVSIKD VVAALEREPQ MSKSSLLFRL YGRPLTEPSA
901: K
001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTESSC GVGIVYRVSS SRFWFAMMSF
801: GFLFAGGRRV GKNQGSSLQP KVVRTISVKD VVAVLEREPQ MSKSTLMYRL IQ
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTESSC GVGIVYRVSS SRFWFAMMSF
801: GFLFAGGRRV GKNQGSSLQP KVVRTISVKD VVAVLEREPQ MSKSTLMYRL IQ
Arabidopsis Description
TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.