CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71499	Canola	nucleus	75.0	41.51
CDY25235	Canola	nucleus	98.86	11.05
CDY22365	Canola	nucleus	85.23	9.69
CDY30789	Canola	mitochondrion	85.23	9.21
AT5G43130.2	Thale cress	nucleus	85.23	8.8
CDY60273	Canola	nucleus	44.32	5.43
CDY03944	Canola	nucleus	45.45	4.71
Os02t0654400-01	Rice	nucleus	37.5	4.53
KXG31790	Sorghum	nucleus	35.23	4.2
TraesCS4A01G163100.1	Wheat	nucleus	37.5	3.94
TraesCS4D01G160000.1	Wheat	nucleus	37.5	3.9
TraesCS4B01G150300.3	Wheat	nucleus	37.5	3.89
Zm00001d039729_P004	Maize	nucleus	34.09	3.88
HORVU4Hr1G034590.13	Barley	cytosol, nucleus	37.5	3.8
TraesCS6B01G281300.1	Wheat	nucleus	34.09	3.77
OQU92338	Sorghum	nucleus	38.64	3.77
CDX71498	Canola	cytosol	4.55	3.77
TraesCS6A01G242900.1	Wheat	nucleus	34.09	3.77
Os03t0441000-01	Rice	nucleus	34.09	3.66
HORVU6Hr1G062340.1	Barley	nucleus	32.95	3.66
TraesCS6D01G225200.2	Wheat	endoplasmic reticulum, nucleus, peroxisome, plastid	34.09	3.58
Zm00001d029598_P003	Maize	nucleus	36.36	3.45
Zm00001d039731_P002	Maize	nucleus	0.0	0.0
GSMUA_Achr4P14200_001	Banana	cytosol	0.0	0.0
CDY68956	Canola	nucleus	0.0	0.0
CDY58727	Canola	peroxisome	0.0	0.0
CDX71497	Canola	plastid	0.0	0.0

Protein Annotations

MapMan:35.1	GO:A0A078I9E3	UniProt:A0A078I9E3	EnsemblPlants:CDY46486	ProteinID:CDY46486	ProteinID:CDY46486.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669
GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00084082001	PFAM:PF05236	PANTHER:PTHR15138	PANTHER:PTHR15138:SF14	InterPro:TAF4	UniParc:UPI0004EF3B9C

Description

BnaA02g36700DBnaA02g36700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I9E3]

Coordinates

chrLK032670:+:118058..118599

Molecular Weight (calculated)

9552.5 Da

IEP (calculated)

11.440

GRAVY (calculated)

-0.878

Length

88 amino acids

Sequence
(BLAST)

1: MAEARQKSVS ESGKDGTQKA TSSGGRNSKD KQDSGRRFTG VGGRRLGKNQ GSSLQPKVVR TISAKDVVAV LEREPQMSKS ILMYRLLQ

Best Arabidopsis Sequence Match ( AT5G43130.1 )
(BLAST)

001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ

Arabidopsis Description

TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.