Factsheet for Os02t0654400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0846900-01
Os01t0858500-01
Os03t0603300-01
Os07t0205200-02
Os07t0296200-01
Os09t0299500-01
Os12t0574800-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27720.1	Os01t0846900-01	AT1G17440.1	17340043
AT1G27720.1	Os07t0296200-01	AT1G50300.1	17340043
AT1G27720.1	Os09t0299500-01	AT1G50300.1	17340043
AT1G27720.1	Os01t0858500-01	AT3G10070.1	17340043
AT1G27720.1	Os03t0603300-01	AT4G34340.1	17340043
AT1G27720.1	Os12t0574800-02	AT4G34340.1	17340043
AT1G27720.1	Os07t0205200-02	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G242900.1	Wheat	nucleus	69.51	63.57
TraesCS6B01G281300.1	Wheat	nucleus	68.82	63.02
HORVU6Hr1G062340.1	Barley	nucleus	68.41	62.88
KXG31790	Sorghum	nucleus	63.46	62.6
TraesCS6D01G225200.2	Wheat	endoplasmic reticulum, nucleus, peroxisome, plastid	69.92	60.74
Zm00001d039729_P004	Maize	nucleus	64.15	60.41
Zm00001d039731_P002	Maize	nucleus	37.77	52.28
CDX71499	Canola	nucleus	10.85	49.69
CDX71498	Canola	cytosol	6.87	47.17
CDY46486	Canola	nucleus, plastid	4.53	37.5
GSMUA_Achr4P14210_001	Banana	nucleus	42.17	36.5
GSMUA_Achr4P03380_001	Banana	nucleus	42.58	35.31
Os03t0441000-01	Rice	nucleus	37.36	33.21
Bra033662.1-P	Field mustard	nucleus	33.79	31.91
CDY22365	Canola	nucleus	33.65	31.65
Bra035961.1-P	Field mustard	nucleus	33.38	31.19
CDY25235	Canola	nucleus	33.52	31.0
CDY30789	Canola	mitochondrion	32.55	29.12
VIT_18s0001g09310.t01	Wine grape	nucleus	36.4	28.62
KRH61389	Soybean	nucleus	35.58	28.31
AT5G43130.2	Thale cress	nucleus	33.1	28.29
Solyc04g078050.2.1	Tomato	nucleus	36.26	28.27
KRH15434	Soybean	nucleus	35.85	27.91
KRH52077	Soybean	nucleus	35.3	27.55
KRH05606	Soybean	mitochondrion	35.71	26.64
AT1G27720.1	Thale cress	nucleus	25.27	25.56
CDY60273	Canola	nucleus	24.73	25.07
Bra030061.1-P	Field mustard	mitochondrion, nucleus	25.14	22.79
CDY68956	Canola	nucleus	16.48	21.82
CDY03944	Canola	nucleus	25.0	21.41
PGSC0003DMT400055395	Potato	nucleus	10.58	13.14
CDY58727	Canola	peroxisome	1.37	10.1

Protein Annotations

MapMan:15.3.5.3.4	EntrezGene:4330186	EMBL:AK069133	ProteinID:BAD25319.1	ProteinID:BAF09525.1	ProteinID:BAS80083.1
ProteinID:EEE57495.1	GO:GO:0001075	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0003713	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0008134
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0045944
GO:GO:0051123	EnsemblPlantsGene:Os02g0654400	EnsemblPlants:Os02t0654400-01	PFAM:PF05236	PFAM:PF12174	PANTHER:PTHR15138
PANTHER:PTHR15138:SF16	UniProt:Q6H7I0	InterPro:RST	InterPro:TAF4	UniParc:UPI00003B4415	RefSeq:XP_015626016.1
SEG:seg	:	:	:	:	:

Description

Transcription initiation factor TFIID component TAF4 domain containing protein. (Os02t0654400-01)

Coordinates

chr2:-:26396501..26403263

Molecular Weight (calculated)

80104.8 Da

IEP (calculated)

10.175

GRAVY (calculated)

-1.018

Length

728 amino acids

Sequence
(BLAST)

001: MSTQLTEHDH QPEQEPPHSE NHLKQAEPNS FQFAEKETGY AGLQNFTGPK VDVGQTSGEQ QHVKQMVGQQ APPGAQDARK RGYQPSIPFN MLIPILQAHL
101: DRDKDMQLQT VWAKLRRNEV HKDDFLRVIR NIVGDQMLKQ AAHKVFAQMQ AQAQRSGQAN ANQQANANQY SLQSQVSSSG SAQLHDQQVH VSTTPNQGQK
201: NQALSSSQTF VQSGTQVQSS MTAHDNSIQR PDAKGMHVTP NRPPVMNSAI SAQTMNKQQQ PTQVQQASQQ IYGTTNRPDQ PYTRPIGGST PLSSLSSESE
301: IRPSSHPAKM EILPSHPMTQ QNAAAQQMQQ NKDVKTNASN PRSNAKQDSG TGKGRAVGTG GSSTKSQGKQ GPPNFSTPPA AKSNKKTAGQ KKSLETSGST
401: PPPPSKKQKT SGTFQEQSFD QLNDVTAVSG VNLREEEEQL LSAPKEESWA SEEARKIAQE EDGKLFLQKG PLLKKLAAIV PKCNLKSIGG DVEHCLSMCV
501: EERLRRFIST LIRVSKQRID TEKSGHQLVI TSDVGRQILR MNQKAKEEWD KKQAEETDKN KKQNEVDGGG TVELDKEKEE TRSKNAKPNK EEDDKMRTTA
601: ANVAARQAVG GSDMLSKWQL MAEQARQKRE GLDLAASSQR GTASRSHMAG KGPTDHHEAS KRTHSAAFGT GGMNRQGRGP FAASHPKGPQ RTISMKDVIC
701: VLEREPQMTK SRLIYRLYER LPGDSTRD

Best Arabidopsis Sequence Match ( AT5G43130.1 )
(BLAST)

001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ

Arabidopsis Description

TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.